Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC15.25■□□□□ 0.03
HDAC4P56524 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HDAC4P56524 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC4P56524 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC4P56524 AC244394.1-201ENST00000435000 1665 ntBASIC15.25■□□□□ 0.03
HDAC4P56524 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HDAC4P56524 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
HDAC4P56524 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC4P56524 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC15.25■□□□□ 0.03
HDAC4P56524 OS9-204ENST00000389146 2091 ntTSL 2 BASIC15.24■□□□□ 0.03
HDAC4P56524 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC15.24■□□□□ 0.03
HDAC4P56524 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
HDAC4P56524 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
HDAC4P56524 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC15.24■□□□□ 0.03
HDAC4P56524 AC015818.8-201ENST00000587907 1519 ntBASIC15.24■□□□□ 0.03
HDAC4P56524 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
HDAC4P56524 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
HDAC4P56524 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC15.24■□□□□ 0.03
HDAC4P56524 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
HDAC4P56524 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC15.24■□□□□ 0.03
HDAC4P56524 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC15.24■□□□□ 0.03
HDAC4P56524 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC15.24■□□□□ 0.03
HDAC4P56524 AL354877.1-201ENST00000424412 413 ntBASIC15.24■□□□□ 0.03
HDAC4P56524 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
HDAC4P56524 AL157407.1-201ENST00000435784 904 ntBASIC15.24■□□□□ 0.03
HDAC4P56524 KLF2P1-201ENST00000447438 1042 ntBASIC15.24■□□□□ 0.03
HDAC4P56524 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC15.24■□□□□ 0.03
HDAC4P56524 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC15.24■□□□□ 0.03
HDAC4P56524 PUDP-206ENST00000540122 825 ntTSL 2 BASIC15.24■□□□□ 0.03
HDAC4P56524 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC15.24■□□□□ 0.03
HDAC4P56524 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC15.24■□□□□ 0.03
HDAC4P56524 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC15.24■□□□□ 0.03
HDAC4P56524 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 AC020910.6-201ENST00000623084 1459 ntBASIC15.24■□□□□ 0.03
HDAC4P56524 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
HDAC4P56524 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC15.24■□□□□ 0.03
HDAC4P56524 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC15.24■□□□□ 0.03
HDAC4P56524 CICP16-201ENST00000502609 2813 ntBASIC15.24■□□□□ 0.03
HDAC4P56524 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
HDAC4P56524 AC087386.2-201ENST00000623212 4637 ntBASIC15.24■□□□□ 0.03
HDAC4P56524 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC15.24■□□□□ 0.03
HDAC4P56524 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 AC136759.1-202ENST00000530858 2194 ntBASIC15.24■□□□□ 0.03
HDAC4P56524 AC016397.2-201ENST00000624848 1985 ntBASIC15.24■□□□□ 0.03
HDAC4P56524 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC15.24■□□□□ 0.03
HDAC4P56524 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC4P56524 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC15.24■□□□□ 0.03
HDAC4P56524 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
HDAC4P56524 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC15.23■□□□□ 0.03
HDAC4P56524 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.23■□□□□ 0.03
HDAC4P56524 HPD-204ENST00000543163 1709 ntTSL 5 BASIC15.23■□□□□ 0.03
HDAC4P56524 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
HDAC4P56524 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC15.23■□□□□ 0.03
HDAC4P56524 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
HDAC4P56524 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC15.23■□□□□ 0.03
HDAC4P56524 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
HDAC4P56524 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
HDAC4P56524 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC15.23■□□□□ 0.03
HDAC4P56524 HSPB1P2-201ENST00000448722 546 ntBASIC15.23■□□□□ 0.03
HDAC4P56524 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 RPSAP36-202ENST00000494591 1261 ntBASIC15.23■□□□□ 0.03
HDAC4P56524 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC15.23■□□□□ 0.03
HDAC4P56524 IGHVIII-5-2-201ENST00000522505 261 ntBASIC15.23■□□□□ 0.03
HDAC4P56524 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC15.23■□□□□ 0.03
HDAC4P56524 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HDAC4P56524 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC15.23■□□□□ 0.03
HDAC4P56524 AL583810.1-201ENST00000553344 1045 ntBASIC15.23■□□□□ 0.03
HDAC4P56524 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms