Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
SIX3O95343 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SIX3O95343 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SIX3O95343 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
SIX3O95343 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SIX3O95343 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SIX3O95343 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SIX3O95343 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SIX3O95343 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
SIX3O95343 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SIX3O95343 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
SIX3O95343 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
SIX3O95343 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC14.27□□□□□ -0.12
SIX3O95343 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC14.27□□□□□ -0.12
SIX3O95343 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
SIX3O95343 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
SIX3O95343 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
SIX3O95343 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
SIX3O95343 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC14.27□□□□□ -0.13
SIX3O95343 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SIX3O95343 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SIX3O95343 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SIX3O95343 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SIX3O95343 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.27□□□□□ -0.13
SIX3O95343 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.27□□□□□ -0.13
SIX3O95343 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.27□□□□□ -0.13
SIX3O95343 C2orf27AP3-201ENST00000434123 579 ntBASIC14.27□□□□□ -0.13
SIX3O95343 INE1-201ENST00000456273 945 ntBASIC14.27□□□□□ -0.13
SIX3O95343 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.27□□□□□ -0.13
SIX3O95343 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.27□□□□□ -0.13
SIX3O95343 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
SIX3O95343 AC078819.1-201ENST00000547454 765 ntBASIC14.27□□□□□ -0.13
SIX3O95343 AC012085.1-201ENST00000548270 765 ntBASIC14.27□□□□□ -0.13
SIX3O95343 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.27□□□□□ -0.13
SIX3O95343 AL354718.3-201ENST00000616414 581 ntBASIC14.27□□□□□ -0.13
SIX3O95343 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SIX3O95343 CR382287.1-201ENST00000623954 586 ntBASIC14.27□□□□□ -0.13
SIX3O95343 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
SIX3O95343 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
SIX3O95343 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
SIX3O95343 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
SIX3O95343 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SIX3O95343 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
SIX3O95343 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
SIX3O95343 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC14.27□□□□□ -0.13
SIX3O95343 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
SIX3O95343 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
SIX3O95343 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC14.27□□□□□ -0.13
SIX3O95343 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.27□□□□□ -0.13
SIX3O95343 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
SIX3O95343 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
SIX3O95343 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
SIX3O95343 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC14.26□□□□□ -0.13
SIX3O95343 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
SIX3O95343 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
SIX3O95343 AL022313.4-201ENST00000562756 2046 ntBASIC14.26□□□□□ -0.13
SIX3O95343 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 TUBB8P4-201ENST00000511806 1324 ntBASIC14.26□□□□□ -0.13
SIX3O95343 AC064801.2-201ENST00000625052 1303 ntBASIC14.26□□□□□ -0.13
SIX3O95343 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC14.26□□□□□ -0.13
SIX3O95343 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
SIX3O95343 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.26□□□□□ -0.13
SIX3O95343 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.26□□□□□ -0.13
SIX3O95343 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.26□□□□□ -0.13
SIX3O95343 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.26□□□□□ -0.13
SIX3O95343 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.26□□□□□ -0.13
SIX3O95343 CDC23-208ENST00000505120 455 ntTSL 3 BASIC14.26□□□□□ -0.13
SIX3O95343 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.26□□□□□ -0.13
SIX3O95343 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.26□□□□□ -0.13
SIX3O95343 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.26□□□□□ -0.13
SIX3O95343 AC027237.1-201ENST00000560942 655 ntBASIC14.26□□□□□ -0.13
SIX3O95343 AC132938.2-201ENST00000579188 680 ntBASIC14.26□□□□□ -0.13
SIX3O95343 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
SIX3O95343 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
SIX3O95343 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 AC073413.1-201ENST00000603927 732 ntBASIC14.26□□□□□ -0.13
SIX3O95343 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.26□□□□□ -0.13
SIX3O95343 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.26□□□□□ -0.13
SIX3O95343 AL591163.1-201ENST00000641757 987 ntBASIC14.26□□□□□ -0.13
SIX3O95343 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC14.26□□□□□ -0.13
SIX3O95343 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
SIX3O95343 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms