Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 FUZ-207ENST00000526575 482 ntTSL 4 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 AC027237.1-201ENST00000560942 655 ntBASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 AC233724.13-201ENST00000598383 410 ntBASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 AL022328.1-201ENST00000610050 478 ntBASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HIF3AQ9Y2N7 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
HIF3AQ9Y2N7 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
HIF3AQ9Y2N7 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC13.21□□□□□ -0.3
HIF3AQ9Y2N7 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HIF3AQ9Y2N7 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
HIF3AQ9Y2N7 AC009093.10-201ENST00000641956 1442 ntBASIC13.21□□□□□ -0.3
HIF3AQ9Y2N7 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
HIF3AQ9Y2N7 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
HIF3AQ9Y2N7 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 AC064801.2-201ENST00000625052 1303 ntBASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 PTPA-215ENST00000432124 567 ntTSL 4 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 BCRP2-202ENST00000447763 634 ntBASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 TMEM198B-204ENST00000484016 896 ntBASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 BCRP6-201ENST00000510112 632 ntBASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 BCRP7-201ENST00000511549 544 ntBASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 RPL28-206ENST00000558752 671 ntTSL 3 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 AC008735.3-201ENST00000596646 500 ntBASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 AC008825.2-201ENST00000603374 718 ntBASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 AC010327.5-201ENST00000586923 3061 ntBASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
HIF3AQ9Y2N7 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
HIF3AQ9Y2N7 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms