Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 ENPP7P8-202ENST00000527856 1345 ntBASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 PHB-210ENST00000511832 1509 ntTSL 2 BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 FES-203ENST00000394302 2133 ntTSL 5 BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 MIR1301-201ENST00000408518 82 ntBASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 DUX4L50-201ENST00000455245 715 ntBASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 AC021016.3-201ENST00000608367 477 ntBASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 AC007250.1-201ENST00000608934 338 ntBASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
SHROOM4Q9ULL8 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC27.27■■□□□ 1.96
SHROOM4Q9ULL8 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC27.27■■□□□ 1.96
SHROOM4Q9ULL8 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC27.27■■□□□ 1.96
SHROOM4Q9ULL8 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SHROOM4Q9ULL8 JTB-202ENST00000356648 1040 ntTSL 2 BASIC27.27■■□□□ 1.96
SHROOM4Q9ULL8 AF274858.1-201ENST00000406288 372 ntBASIC27.27■■□□□ 1.96
SHROOM4Q9ULL8 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC27.27■■□□□ 1.96
SHROOM4Q9ULL8 AL451000.1-201ENST00000451300 1186 ntBASIC27.27■■□□□ 1.96
SHROOM4Q9ULL8 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC27.27■■□□□ 1.96
SHROOM4Q9ULL8 OR2A1-AS1-210ENST00000496968 531 ntBASIC27.27■■□□□ 1.96
SHROOM4Q9ULL8 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC27.27■■□□□ 1.96
SHROOM4Q9ULL8 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC27.27■■□□□ 1.96
SHROOM4Q9ULL8 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC27.27■■□□□ 1.96
SHROOM4Q9ULL8 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
SHROOM4Q9ULL8 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC27.27■■□□□ 1.96
SHROOM4Q9ULL8 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SHROOM4Q9ULL8 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC27.27■■□□□ 1.96
SHROOM4Q9ULL8 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SHROOM4Q9ULL8 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC27.26■■□□□ 1.96
SHROOM4Q9ULL8 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 GAS5-209ENST00000430245 723 ntTSL 3 BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.95
SHROOM4Q9ULL8 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 AC010976.2-201ENST00000609697 852 ntBASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 MIR6816-201ENST00000620368 66 ntBASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC27.25■■□□□ 1.95
SHROOM4Q9ULL8 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC27.25■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms