Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 DPY19L2P5-201ENST00000456300 331 ntBASIC16.16■□□□□ 0.18
VTA1Q9NP79 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 OR5BD1P-201ENST00000532527 817 ntBASIC16.16■□□□□ 0.18
VTA1Q9NP79 NEU3-207ENST00000534628 746 ntTSL 2 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 DBP-202ENST00000593500 712 ntTSL 2 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 AL133467.4-201ENST00000602953 725 ntBASIC16.16■□□□□ 0.18
VTA1Q9NP79 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.16■□□□□ 0.18
VTA1Q9NP79 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VTA1Q9NP79 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VTA1Q9NP79 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VTA1Q9NP79 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VTA1Q9NP79 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VTA1Q9NP79 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VTA1Q9NP79 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VTA1Q9NP79 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 FTX-216ENST00000638985 1367 ntTSL 5 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VTA1Q9NP79 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VTA1Q9NP79 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VTA1Q9NP79 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
VTA1Q9NP79 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC16.15■□□□□ 0.18
VTA1Q9NP79 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VTA1Q9NP79 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 RPS23-204ENST00000507980 836 ntTSL 2 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VTA1Q9NP79 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 NDUFB10P1-201ENST00000567319 521 ntBASIC16.15■□□□□ 0.18
VTA1Q9NP79 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VTA1Q9NP79 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VTA1Q9NP79 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VTA1Q9NP79 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VTA1Q9NP79 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VTA1Q9NP79 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VTA1Q9NP79 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
VTA1Q9NP79 CCT8L1P-201ENST00000465400 1674 ntBASIC16.14■□□□□ 0.18
VTA1Q9NP79 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC16.14■□□□□ 0.17
VTA1Q9NP79 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
VTA1Q9NP79 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VTA1Q9NP79 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
VTA1Q9NP79 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
VTA1Q9NP79 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VTA1Q9NP79 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.14■□□□□ 0.17
VTA1Q9NP79 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
VTA1Q9NP79 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VTA1Q9NP79 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VTA1Q9NP79 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VTA1Q9NP79 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VTA1Q9NP79 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms