Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.62■□□□□ 0.25
ERCC4Q92889 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.62■□□□□ 0.25
ERCC4Q92889 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.62■□□□□ 0.25
ERCC4Q92889 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC16.62■□□□□ 0.25
ERCC4Q92889 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
ERCC4Q92889 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.62■□□□□ 0.25
ERCC4Q92889 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC16.62■□□□□ 0.25
ERCC4Q92889 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
ERCC4Q92889 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
ERCC4Q92889 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
ERCC4Q92889 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
ERCC4Q92889 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.62■□□□□ 0.25
ERCC4Q92889 AL731571.1-201ENST00000617058 5428 ntBASIC16.62■□□□□ 0.25
ERCC4Q92889 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
ERCC4Q92889 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ERCC4Q92889 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC16.61■□□□□ 0.25
ERCC4Q92889 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC16.61■□□□□ 0.25
ERCC4Q92889 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
ERCC4Q92889 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC16.61■□□□□ 0.25
ERCC4Q92889 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
ERCC4Q92889 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.61■□□□□ 0.25
ERCC4Q92889 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.61■□□□□ 0.25
ERCC4Q92889 TSPY16P-201ENST00000449843 468 ntBASIC16.61■□□□□ 0.25
ERCC4Q92889 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.61■□□□□ 0.25
ERCC4Q92889 GCOM2-201ENST00000509133 1104 ntBASIC16.61■□□□□ 0.25
ERCC4Q92889 RNA5SP421-201ENST00000516864 134 ntBASIC16.61■□□□□ 0.25
ERCC4Q92889 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.61■□□□□ 0.25
ERCC4Q92889 AC009118.2-201ENST00000613275 655 ntBASIC16.61■□□□□ 0.25
ERCC4Q92889 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.61■□□□□ 0.25
ERCC4Q92889 CU634019.7-201ENST00000624153 1185 ntBASIC16.61■□□□□ 0.25
ERCC4Q92889 FP236241.2-201ENST00000624906 1185 ntBASIC16.61■□□□□ 0.25
ERCC4Q92889 DMBT1P1-203ENST00000636837 4628 ntBASIC16.61■□□□□ 0.25
ERCC4Q92889 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC16.61■□□□□ 0.25
ERCC4Q92889 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC16.61■□□□□ 0.25
ERCC4Q92889 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC16.61■□□□□ 0.25
ERCC4Q92889 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC16.61■□□□□ 0.25
ERCC4Q92889 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.61■□□□□ 0.25
ERCC4Q92889 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ERCC4Q92889 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
ERCC4Q92889 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC16.61■□□□□ 0.25
ERCC4Q92889 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC4Q92889 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
ERCC4Q92889 AC019294.4-201ENST00000561777 2905 ntBASIC16.6■□□□□ 0.25
ERCC4Q92889 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
ERCC4Q92889 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC16.6■□□□□ 0.25
ERCC4Q92889 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC4Q92889 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC4Q92889 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC4Q92889 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC16.6■□□□□ 0.25
ERCC4Q92889 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC4Q92889 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC4Q92889 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC16.6■□□□□ 0.25
ERCC4Q92889 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC16.6■□□□□ 0.25
ERCC4Q92889 AC005562.1-201ENST00000583030 3219 ntBASIC16.6■□□□□ 0.25
ERCC4Q92889 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC4Q92889 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC4Q92889 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.6■□□□□ 0.25
ERCC4Q92889 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
ERCC4Q92889 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC4Q92889 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC4Q92889 TLE1P1-201ENST00000422965 589 ntBASIC16.6■□□□□ 0.25
ERCC4Q92889 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.6■□□□□ 0.25
ERCC4Q92889 AL391280.1-201ENST00000506969 1062 ntBASIC16.6■□□□□ 0.25
ERCC4Q92889 SPCS2P1-201ENST00000561636 679 ntBASIC16.6■□□□□ 0.25
ERCC4Q92889 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.6■□□□□ 0.25
ERCC4Q92889 AL096865.1-201ENST00000606796 927 ntBASIC16.6■□□□□ 0.25
ERCC4Q92889 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC4Q92889 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC16.6■□□□□ 0.25
ERCC4Q92889 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ERCC4Q92889 DDC-213ENST00000617822 1809 ntTSL 3 BASIC16.6■□□□□ 0.25
ERCC4Q92889 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms