Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 ADK-205ENST00000539909 1866 ntTSL 2 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 PTPRVP-205ENST00000641549 5067 ntBASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 WDR73-202ENST00000434634 5387 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 HPD-204ENST00000543163 1709 ntTSL 5 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 MST1P2-201ENST00000457982 2291 ntBASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 PNKD-204ENST00000436005 978 ntTSL 5 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 ELK1P1-201ENST00000485699 580 ntBASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 SERBP1P5-201ENST00000510079 1181 ntBASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 AC138466.3-201ENST00000619983 221 ntBASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 FAM193A-201ENST00000324666 4846 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 WTIP-202ENST00000590071 13665 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 OS9-207ENST00000439210 1946 ntTSL 2 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC12.8□□□□□ -0.36
CCDC54Q8NEL0 CACNA1G-225ENST00000512389 6837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 EIF3A-201ENST00000369144 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 F10-203ENST00000409306 1450 ntTSL 3 BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 NIN-206ENST00000453196 6785 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 TECTA-201ENST00000264037 6468 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 RAC2-204ENST00000406508 893 ntTSL 5 BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 AC098850.1-201ENST00000419919 790 ntBASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 PMS2P2-201ENST00000425039 1128 ntBASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 CYMP-203ENST00000474680 1263 ntBASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 CDC23-208ENST00000505120 455 ntTSL 3 BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 NEU3-203ENST00000529024 581 ntTSL 3 BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 WDR88-203ENST00000592765 651 ntTSL 5 BASIC12.79□□□□□ -0.36
CCDC54Q8NEL0 AC006538.3-201ENST00000612495 578 ntBASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms