Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
YBX1P67809 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
YBX1P67809 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC14.21□□□□□ -0.13
YBX1P67809 AC018735.1-201ENST00000437208 1502 ntBASIC14.21□□□□□ -0.13
YBX1P67809 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
YBX1P67809 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
YBX1P67809 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
YBX1P67809 AC139712.1-201ENST00000378256 1875 ntBASIC14.21□□□□□ -0.13
YBX1P67809 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC14.21□□□□□ -0.13
YBX1P67809 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
YBX1P67809 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.21□□□□□ -0.13
YBX1P67809 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.21□□□□□ -0.13
YBX1P67809 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
YBX1P67809 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
YBX1P67809 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
YBX1P67809 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC14.21□□□□□ -0.13
YBX1P67809 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC14.21□□□□□ -0.13
YBX1P67809 MTX1P1-201ENST00000440904 838 ntBASIC14.21□□□□□ -0.13
YBX1P67809 Z93015.1-201ENST00000451718 390 ntBASIC14.21□□□□□ -0.13
YBX1P67809 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC14.21□□□□□ -0.13
YBX1P67809 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.21□□□□□ -0.13
YBX1P67809 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC14.21□□□□□ -0.13
YBX1P67809 MIR4538-201ENST00000581377 78 ntBASIC14.21□□□□□ -0.13
YBX1P67809 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
YBX1P67809 AC009955.4-201ENST00000597192 544 ntBASIC14.21□□□□□ -0.13
YBX1P67809 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
YBX1P67809 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC14.21□□□□□ -0.13
YBX1P67809 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC14.21□□□□□ -0.13
YBX1P67809 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
YBX1P67809 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
YBX1P67809 GALC-206ENST00000544807 2528 ntTSL 2 BASIC14.21□□□□□ -0.13
YBX1P67809 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
YBX1P67809 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
YBX1P67809 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.14
YBX1P67809 KRT8P24-201ENST00000560290 1559 ntBASIC14.21□□□□□ -0.14
YBX1P67809 AL590440.2-201ENST00000641973 1595 ntBASIC14.21□□□□□ -0.14
YBX1P67809 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
YBX1P67809 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
YBX1P67809 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
YBX1P67809 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
YBX1P67809 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC14.2□□□□□ -0.14
YBX1P67809 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
YBX1P67809 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
YBX1P67809 AC023794.5-201ENST00000564380 2157 ntBASIC14.2□□□□□ -0.14
YBX1P67809 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
YBX1P67809 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
YBX1P67809 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 TUBB1P2-201ENST00000422712 1306 ntBASIC14.2□□□□□ -0.14
YBX1P67809 TUBB1P1-201ENST00000503144 1300 ntBASIC14.2□□□□□ -0.14
YBX1P67809 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 GOLGA8VP-201ENST00000559009 1798 ntBASIC14.2□□□□□ -0.14
YBX1P67809 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.2□□□□□ -0.14
YBX1P67809 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
YBX1P67809 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC14.2□□□□□ -0.14
YBX1P67809 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
YBX1P67809 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC14.2□□□□□ -0.14
YBX1P67809 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC14.2□□□□□ -0.14
YBX1P67809 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC14.2□□□□□ -0.14
YBX1P67809 HSPB1P2-201ENST00000448722 546 ntBASIC14.2□□□□□ -0.14
YBX1P67809 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC14.2□□□□□ -0.14
YBX1P67809 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 AC108725.1-201ENST00000495472 409 ntBASIC14.2□□□□□ -0.14
YBX1P67809 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.2□□□□□ -0.14
YBX1P67809 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.2□□□□□ -0.14
YBX1P67809 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC14.2□□□□□ -0.14
YBX1P67809 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC14.2□□□□□ -0.14
YBX1P67809 AC244157.2-201ENST00000616239 1006 ntBASIC14.2□□□□□ -0.14
YBX1P67809 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 AC027612.1-201ENST00000445234 2395 ntBASIC14.2□□□□□ -0.14
YBX1P67809 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC14.2□□□□□ -0.14
YBX1P67809 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
YBX1P67809 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
YBX1P67809 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 AC215219.1-201ENST00000400706 1817 ntBASIC14.2□□□□□ -0.14
YBX1P67809 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.2□□□□□ -0.14
YBX1P67809 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
YBX1P67809 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
YBX1P67809 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
YBX1P67809 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
YBX1P67809 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms