Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.39□□□□□ -0.11
PKNOX1P55347 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC14.39□□□□□ -0.11
PKNOX1P55347 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.39□□□□□ -0.11
PKNOX1P55347 AC245100.3-201ENST00000441281 285 ntBASIC14.39□□□□□ -0.11
PKNOX1P55347 FAM207CP-201ENST00000443486 507 ntBASIC14.39□□□□□ -0.11
PKNOX1P55347 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 AC093433.1-201ENST00000458048 571 ntBASIC14.39□□□□□ -0.11
PKNOX1P55347 AC092183.1-201ENST00000469884 875 ntBASIC14.39□□□□□ -0.11
PKNOX1P55347 TMEM198B-204ENST00000484016 896 ntBASIC14.39□□□□□ -0.11
PKNOX1P55347 MESTP3-201ENST00000503460 968 ntBASIC14.39□□□□□ -0.11
PKNOX1P55347 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.39□□□□□ -0.11
PKNOX1P55347 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.39□□□□□ -0.11
PKNOX1P55347 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.39□□□□□ -0.11
PKNOX1P55347 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 NUTM2HP-201ENST00000442076 2498 ntBASIC14.39□□□□□ -0.11
PKNOX1P55347 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
PKNOX1P55347 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
PKNOX1P55347 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
PKNOX1P55347 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
PKNOX1P55347 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
PKNOX1P55347 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
PKNOX1P55347 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PKNOX1P55347 AC004899.2-201ENST00000622993 3860 ntBASIC14.39□□□□□ -0.11
PKNOX1P55347 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
PKNOX1P55347 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
PKNOX1P55347 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC14.38□□□□□ -0.11
PKNOX1P55347 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC14.38□□□□□ -0.11
PKNOX1P55347 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
PKNOX1P55347 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
PKNOX1P55347 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC14.38□□□□□ -0.11
PKNOX1P55347 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.38□□□□□ -0.11
PKNOX1P55347 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
PKNOX1P55347 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC14.38□□□□□ -0.11
PKNOX1P55347 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC14.38□□□□□ -0.11
PKNOX1P55347 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
PKNOX1P55347 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
PKNOX1P55347 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC14.38□□□□□ -0.11
PKNOX1P55347 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
PKNOX1P55347 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.38□□□□□ -0.11
PKNOX1P55347 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.38□□□□□ -0.11
PKNOX1P55347 TSPY16P-201ENST00000449843 468 ntBASIC14.38□□□□□ -0.11
PKNOX1P55347 API5-211ENST00000534695 560 ntTSL 5 BASIC14.38□□□□□ -0.11
PKNOX1P55347 AP001002.3-201ENST00000623482 206 ntBASIC14.38□□□□□ -0.11
PKNOX1P55347 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
PKNOX1P55347 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
PKNOX1P55347 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC14.38□□□□□ -0.11
PKNOX1P55347 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.38□□□□□ -0.11
PKNOX1P55347 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
PKNOX1P55347 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PKNOX1P55347 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
PKNOX1P55347 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.37□□□□□ -0.11
PKNOX1P55347 HADH-202ENST00000403312 1752 ntTSL 5 BASIC14.37□□□□□ -0.11
PKNOX1P55347 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
PKNOX1P55347 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
PKNOX1P55347 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.37□□□□□ -0.11
PKNOX1P55347 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC14.37□□□□□ -0.11
PKNOX1P55347 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
PKNOX1P55347 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC14.37□□□□□ -0.11
PKNOX1P55347 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.37□□□□□ -0.11
PKNOX1P55347 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.37□□□□□ -0.11
PKNOX1P55347 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PKNOX1P55347 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.37□□□□□ -0.11
PKNOX1P55347 AC103988.2-201ENST00000561804 725 ntBASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms