Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC16.61■□□□□ 0.25
SCN4AP35499 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC16.61■□□□□ 0.25
SCN4AP35499 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC16.61■□□□□ 0.25
SCN4AP35499 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC16.61■□□□□ 0.25
SCN4AP35499 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
SCN4AP35499 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
SCN4AP35499 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC16.61■□□□□ 0.25
SCN4AP35499 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SCN4AP35499 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 AC008620.2-201ENST00000510294 1569 ntBASIC16.61■□□□□ 0.25
SCN4AP35499 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SCN4AP35499 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC16.61■□□□□ 0.25
SCN4AP35499 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
SCN4AP35499 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 AL121753.2-201ENST00000624581 1461 ntBASIC16.61■□□□□ 0.25
SCN4AP35499 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 AL359182.1-201ENST00000435915 469 ntTSL 3 BASIC16.61■□□□□ 0.25
SCN4AP35499 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC16.61■□□□□ 0.25
SCN4AP35499 RNASEH2CP1-201ENST00000454281 502 ntBASIC16.61■□□□□ 0.25
SCN4AP35499 RN7SL838P-201ENST00000481676 295 ntBASIC16.61■□□□□ 0.25
SCN4AP35499 FAM86JP-202ENST00000484500 988 ntBASIC16.61■□□□□ 0.25
SCN4AP35499 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC16.61■□□□□ 0.25
SCN4AP35499 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC16.61■□□□□ 0.25
SCN4AP35499 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC16.61■□□□□ 0.25
SCN4AP35499 RN7SL300P-201ENST00000582522 318 ntBASIC16.61■□□□□ 0.25
SCN4AP35499 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC16.61■□□□□ 0.25
SCN4AP35499 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC16.61■□□□□ 0.25
SCN4AP35499 AC139100.2-201ENST00000616901 662 ntBASIC16.61■□□□□ 0.25
SCN4AP35499 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC16.61■□□□□ 0.25
SCN4AP35499 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SCN4AP35499 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
SCN4AP35499 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SCN4AP35499 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.6■□□□□ 0.25
SCN4AP35499 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.6■□□□□ 0.25
SCN4AP35499 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.6■□□□□ 0.25
SCN4AP35499 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC16.6■□□□□ 0.25
SCN4AP35499 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
SCN4AP35499 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 PES1P2-201ENST00000449745 1735 ntBASIC16.6■□□□□ 0.25
SCN4AP35499 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 OSCP1-201ENST00000235532 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 OSCP1-203ENST00000356637 1463 ntTSL 5 BASIC16.6■□□□□ 0.25
SCN4AP35499 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC16.6■□□□□ 0.25
SCN4AP35499 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.6■□□□□ 0.25
SCN4AP35499 S100A2-202ENST00000368708 998 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 DNM1P46-202ENST00000415963 882 ntBASIC16.6■□□□□ 0.25
SCN4AP35499 HNRNPA3P12-201ENST00000437410 1063 ntBASIC16.6■□□□□ 0.25
SCN4AP35499 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC16.6■□□□□ 0.25
SCN4AP35499 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC16.6■□□□□ 0.25
SCN4AP35499 CCND3P2-201ENST00000579393 537 ntBASIC16.6■□□□□ 0.25
SCN4AP35499 MAFG-AS1-202ENST00000583492 969 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 RAB11B-205ENST00000601897 577 ntTSL 3 BASIC16.6■□□□□ 0.25
SCN4AP35499 MIR8071-1-201ENST00000616769 65 ntBASIC16.6■□□□□ 0.25
SCN4AP35499 MIR8071-2-201ENST00000616772 65 ntBASIC16.6■□□□□ 0.25
SCN4AP35499 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SCN4AP35499 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.6■□□□□ 0.25
SCN4AP35499 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SCN4AP35499 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC16.59■□□□□ 0.25
SCN4AP35499 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.59■□□□□ 0.25
SCN4AP35499 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.59■□□□□ 0.25
SCN4AP35499 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SCN4AP35499 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SCN4AP35499 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SCN4AP35499 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
SCN4AP35499 WDR54-202ENST00000409791 854 ntTSL 3 BASIC16.59■□□□□ 0.25
SCN4AP35499 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
SCN4AP35499 DLG4-206ENST00000485100 1004 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SCN4AP35499 AC233724.9-201ENST00000511694 407 ntBASIC16.59■□□□□ 0.25
SCN4AP35499 MIR6074-201ENST00000612054 107 ntBASIC16.59■□□□□ 0.25
SCN4AP35499 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC16.59■□□□□ 0.25
SCN4AP35499 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms