Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
TPM1P09493 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.18■□□□□ 0.18
TPM1P09493 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TPM1P09493 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TPM1P09493 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TPM1P09493 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
TPM1P09493 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TPM1P09493 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TPM1P09493 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC16.17■□□□□ 0.18
TPM1P09493 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TPM1P09493 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC16.17■□□□□ 0.18
TPM1P09493 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TPM1P09493 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TPM1P09493 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.17■□□□□ 0.18
TPM1P09493 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.17■□□□□ 0.18
TPM1P09493 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
TPM1P09493 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
TPM1P09493 TREML5P-201ENST00000421694 576 ntBASIC16.17■□□□□ 0.18
TPM1P09493 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.17■□□□□ 0.18
TPM1P09493 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.17■□□□□ 0.18
TPM1P09493 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
TPM1P09493 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.17■□□□□ 0.18
TPM1P09493 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.17■□□□□ 0.18
TPM1P09493 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.17■□□□□ 0.18
TPM1P09493 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.17■□□□□ 0.18
TPM1P09493 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TPM1P09493 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
TPM1P09493 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.17■□□□□ 0.18
TPM1P09493 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.17■□□□□ 0.18
TPM1P09493 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.17■□□□□ 0.18
TPM1P09493 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.17■□□□□ 0.18
TPM1P09493 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TPM1P09493 AC134684.3-201ENST00000641758 218 ntBASIC16.17■□□□□ 0.18
TPM1P09493 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TPM1P09493 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TPM1P09493 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC16.17■□□□□ 0.18
TPM1P09493 LRRC59-203ENST00000576448 1531 ntBASIC16.17■□□□□ 0.18
TPM1P09493 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TPM1P09493 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.17■□□□□ 0.18
TPM1P09493 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TPM1P09493 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TPM1P09493 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TPM1P09493 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
TPM1P09493 UBE3A-226ENST00000637886 8725 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
TPM1P09493 CICP16-201ENST00000502609 2813 ntBASIC16.17■□□□□ 0.18
TPM1P09493 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TPM1P09493 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC16.17■□□□□ 0.18
TPM1P09493 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TPM1P09493 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TPM1P09493 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TPM1P09493 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TPM1P09493 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 AC003102.2-201ENST00000589195 1469 ntBASIC16.16■□□□□ 0.18
TPM1P09493 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
TPM1P09493 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
TPM1P09493 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC16.16■□□□□ 0.18
TPM1P09493 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC16.16■□□□□ 0.18
TPM1P09493 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TPM1P09493 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
TPM1P09493 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.16■□□□□ 0.18
TPM1P09493 AL589987.1-201ENST00000453380 819 ntBASIC16.16■□□□□ 0.18
TPM1P09493 AC004967.1-201ENST00000453589 447 ntBASIC16.16■□□□□ 0.18
TPM1P09493 GIMAP3P-201ENST00000495150 836 ntBASIC16.16■□□□□ 0.18
TPM1P09493 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
TPM1P09493 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.16■□□□□ 0.18
TPM1P09493 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.16■□□□□ 0.18
TPM1P09493 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.16■□□□□ 0.18
TPM1P09493 AL662799.1-202ENST00000614205 422 ntBASIC16.16■□□□□ 0.18
TPM1P09493 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 TP73-207ENST00000378290 1831 ntTSL 2 BASIC16.16■□□□□ 0.18
TPM1P09493 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 HPD-204ENST00000543163 1709 ntTSL 5 BASIC16.16■□□□□ 0.18
TPM1P09493 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC16.16■□□□□ 0.18
TPM1P09493 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TPM1P09493 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms