Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC8.72□□□□□ -1.01
APOBP04114 TCEAL5-201ENST00000372680 1168 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
APOBP04114 GRP-202ENST00000420468 579 ntAPPRIS ALT2 TSL 1 (best) BASIC8.72□□□□□ -1.01
APOBP04114 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC8.72□□□□□ -1.01
APOBP04114 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC8.72□□□□□ -1.01
APOBP04114 AL450346.2-201ENST00000495602 1024 ntBASIC8.72□□□□□ -1.01
APOBP04114 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC8.72□□□□□ -1.01
APOBP04114 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC8.72□□□□□ -1.01
APOBP04114 AC027228.1-201ENST00000560094 325 ntTSL 3 BASIC8.72□□□□□ -1.01
APOBP04114 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC8.72□□□□□ -1.01
APOBP04114 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC8.72□□□□□ -1.01
APOBP04114 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC8.72□□□□□ -1.01
APOBP04114 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC8.72□□□□□ -1.01
APOBP04114 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC8.72□□□□□ -1.01
APOBP04114 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC8.72□□□□□ -1.01
APOBP04114 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
APOBP04114 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC8.72□□□□□ -1.01
APOBP04114 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
APOBP04114 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
APOBP04114 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC8.72□□□□□ -1.01
APOBP04114 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC8.72□□□□□ -1.01
APOBP04114 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
APOBP04114 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
APOBP04114 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
APOBP04114 MYL6-215ENST00000549566 685 ntTSL 2 BASIC8.72□□□□□ -1.01
APOBP04114 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC8.72□□□□□ -1.01
APOBP04114 OR3A1-202ENST00000615105 966 ntBASIC8.72□□□□□ -1.01
APOBP04114 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
APOBP04114 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC8.72□□□□□ -1.01
APOBP04114 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC8.72□□□□□ -1.01
APOBP04114 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
APOBP04114 AC002350.2-201ENST00000623894 1828 ntBASIC8.72□□□□□ -1.01
APOBP04114 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC8.72□□□□□ -1.01
APOBP04114 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC8.72□□□□□ -1.01
APOBP04114 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC8.72□□□□□ -1.01
APOBP04114 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC8.72□□□□□ -1.01
APOBP04114 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC8.72□□□□□ -1.01
APOBP04114 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC8.72□□□□□ -1.01
APOBP04114 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC8.71□□□□□ -1.01
APOBP04114 AL162727.3-201ENST00000635661 2787 ntBASIC8.71□□□□□ -1.01
APOBP04114 BTF3-202ENST00000380591 1237 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
APOBP04114 AL121972.2-201ENST00000431108 556 ntTSL 4 BASIC8.71□□□□□ -1.01
APOBP04114 PRDX3P2-201ENST00000447051 611 ntBASIC8.71□□□□□ -1.01
APOBP04114 KRT18P42-201ENST00000505048 1255 ntBASIC8.71□□□□□ -1.01
APOBP04114 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC8.71□□□□□ -1.01
APOBP04114 AC140912.1-202ENST00000561802 194 ntTSL 3 BASIC8.71□□□□□ -1.01
APOBP04114 Metazoa_SRP.147-201ENST00000576563 312 ntBASIC8.71□□□□□ -1.01
APOBP04114 RN7SL480P-201ENST00000581481 294 ntBASIC8.71□□□□□ -1.01
APOBP04114 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC8.71□□□□□ -1.01
APOBP04114 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
APOBP04114 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC8.71□□□□□ -1.01
APOBP04114 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC8.71□□□□□ -1.01
APOBP04114 AC015813.5-201ENST00000624641 1514 ntBASIC8.71□□□□□ -1.01
APOBP04114 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
APOBP04114 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.01
APOBP04114 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
APOBP04114 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
APOBP04114 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC8.71□□□□□ -1.01
APOBP04114 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
APOBP04114 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
APOBP04114 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.01
APOBP04114 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC8.71□□□□□ -1.01
APOBP04114 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
APOBP04114 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC8.71□□□□□ -1.01
APOBP04114 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
APOBP04114 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
APOBP04114 AC246787.2-202ENST00000418566 370 ntTSL 3 BASIC8.71□□□□□ -1.01
APOBP04114 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC8.71□□□□□ -1.01
APOBP04114 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC8.71□□□□□ -1.01
APOBP04114 TPST2P1-201ENST00000564073 1102 ntBASIC8.71□□□□□ -1.01
APOBP04114 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC8.71□□□□□ -1.01
APOBP04114 AC139100.2-201ENST00000616901 662 ntBASIC8.71□□□□□ -1.01
APOBP04114 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC8.71□□□□□ -1.01
APOBP04114 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
APOBP04114 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
APOBP04114 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC8.71□□□□□ -1.02
APOBP04114 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC8.71□□□□□ -1.02
APOBP04114 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC8.71□□□□□ -1.02
APOBP04114 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC8.71□□□□□ -1.02
APOBP04114 AC006059.1-201ENST00000438017 722 ntTSL 5 BASIC8.71□□□□□ -1.02
APOBP04114 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
APOBP04114 RPL29P2-202ENST00000498671 657 ntBASIC8.71□□□□□ -1.02
APOBP04114 MT3-202ENST00000561640 514 ntTSL 3 BASIC8.71□□□□□ -1.02
APOBP04114 C17orf62-234ENST00000584503 584 ntTSL 2 BASIC8.71□□□□□ -1.02
APOBP04114 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC8.71□□□□□ -1.02
APOBP04114 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC8.71□□□□□ -1.02
APOBP04114 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
APOBP04114 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.02
APOBP04114 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
APOBP04114 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC8.71□□□□□ -1.02
APOBP04114 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
APOBP04114 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC8.71□□□□□ -1.02
APOBP04114 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
APOBP04114 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
APOBP04114 BCL2L11-203ENST00000357757 947 ntTSL 5 BASIC8.71□□□□□ -1.02
APOBP04114 NAT8B-201ENST00000377712 765 ntAPPRIS P1 BASIC8.71□□□□□ -1.02
APOBP04114 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC8.71□□□□□ -1.02
APOBP04114 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC8.71□□□□□ -1.02
APOBP04114 WDR54-202ENST00000409791 854 ntTSL 3 BASIC8.71□□□□□ -1.02
APOBP04114 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC8.71□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms