Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 ARID4A-202ENST00000355431 5891 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 MIR943-201ENST00000401286 94 ntBASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 MIR1233-2-201ENST00000408138 82 ntBASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 MIR1233-1-201ENST00000408722 82 ntBASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 AC092337.1-201ENST00000568699 1129 ntBASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 MRVI1-202ENST00000424001 5815 ntTSL 5 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 ARPIN-201ENST00000357484 7591 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 CYB5RL-201ENST00000287899 5777 ntTSL 3 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 LINC00869-206ENST00000610578 5734 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 LCA5-202ENST00000392959 4719 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 LINC01749-202ENST00000607802 3408 ntTSL 2 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 AC241585.1-201ENST00000433527 519 ntBASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 AC114501.2-201ENST00000439631 535 ntBASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 AC097493.3-201ENST00000509725 367 ntBASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 ZNF890P-202ENST00000530367 1156 ntBASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 STOM-203ENST00000538954 1257 ntTSL 5 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 AC107373.2-201ENST00000607735 490 ntBASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 AL691403.2-201ENST00000618460 490 ntBASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 DNM1P41-201ENST00000623634 3350 ntBASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 ANKRD36B-204ENST00000438709 6067 ntTSL 5 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 API5-203ENST00000455725 2257 ntTSL 2 BASIC12.69□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms