Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL4A4P53420 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
COL4A4P53420 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL4A4P53420 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL4A4P53420 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.14■□□□□ 0.01
COL4A4P53420 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.14■□□□□ 0.01
COL4A4P53420 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.14■□□□□ 0.01
COL4A4P53420 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL4A4P53420 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL4A4P53420 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL4A4P53420 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL4A4P53420 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL4A4P53420 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
COL4A4P53420 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL4A4P53420 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC15.14■□□□□ 0.01
COL4A4P53420 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL4A4P53420 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC15.14■□□□□ 0.01
COL4A4P53420 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL4A4P53420 OR52M2P-201ENST00000414298 959 ntBASIC15.14■□□□□ 0.01
COL4A4P53420 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC15.14■□□□□ 0.01
COL4A4P53420 HNRNPA1P2-207ENST00000432375 960 ntBASIC15.14■□□□□ 0.01
COL4A4P53420 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
COL4A4P53420 HINT1-205ENST00000508488 703 ntTSL 2 BASIC15.14■□□□□ 0.01
COL4A4P53420 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.14■□□□□ 0.01
COL4A4P53420 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC15.14■□□□□ 0.01
COL4A4P53420 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC15.14■□□□□ 0.01
COL4A4P53420 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC15.14■□□□□ 0.01
COL4A4P53420 RN7SL556P-201ENST00000582856 298 ntBASIC15.14■□□□□ 0.01
COL4A4P53420 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC15.14■□□□□ 0.01
COL4A4P53420 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.14■□□□□ 0.01
COL4A4P53420 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL4A4P53420 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
COL4A4P53420 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
COL4A4P53420 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL4A4P53420 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL4A4P53420 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL4A4P53420 TKT-201ENST00000296289 1931 ntTSL 5 BASIC15.14■□□□□ 0.01
COL4A4P53420 HSPA7-201ENST00000445535 1927 ntBASIC15.14■□□□□ 0.01
COL4A4P53420 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC15.13■□□□□ 0.01
COL4A4P53420 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
COL4A4P53420 MSANTD2P1-201ENST00000445341 1368 ntBASIC15.13■□□□□ 0.01
COL4A4P53420 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC15.13■□□□□ 0.01
COL4A4P53420 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC15.13■□□□□ 0.01
COL4A4P53420 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.13■□□□□ 0.01
COL4A4P53420 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL4A4P53420 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL4A4P53420 SAT1-201ENST00000379251 801 ntTSL 2 BASIC15.13■□□□□ 0.01
COL4A4P53420 SAT1-202ENST00000379253 909 ntTSL 2 BASIC15.13■□□□□ 0.01
COL4A4P53420 SAT1-203ENST00000379254 868 ntTSL 3 BASIC15.13■□□□□ 0.01
COL4A4P53420 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL4A4P53420 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC15.13■□□□□ 0.01
COL4A4P53420 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC15.13■□□□□ 0.01
COL4A4P53420 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL4A4P53420 RN7SL788P-201ENST00000460504 316 ntBASIC15.13■□□□□ 0.01
COL4A4P53420 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL4A4P53420 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC15.13■□□□□ 0.01
COL4A4P53420 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC15.13■□□□□ 0.01
COL4A4P53420 SNORD3B-1-201ENST00000577988 758 ntBASIC15.13■□□□□ 0.01
COL4A4P53420 TYMSP2-201ENST00000589501 424 ntBASIC15.13■□□□□ 0.01
COL4A4P53420 AL021707.6-201ENST00000609212 491 ntBASIC15.13■□□□□ 0.01
COL4A4P53420 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC15.13■□□□□ 0.01
COL4A4P53420 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL4A4P53420 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL4A4P53420 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
COL4A4P53420 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
COL4A4P53420 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL4A4P53420 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.13■□□□□ 0.01
COL4A4P53420 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC15.13■□□□□ 0.01
COL4A4P53420 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.13■□□□□ 0.01
COL4A4P53420 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC15.13■□□□□ 0.01
COL4A4P53420 DBET-201ENST00000630918 3363 ntBASIC15.13■□□□□ 0.01
COL4A4P53420 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC15.13■□□□□ 0.01
COL4A4P53420 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
COL4A4P53420 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
COL4A4P53420 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.13■□□□□ 0.01
COL4A4P53420 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL4A4P53420 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC15.13■□□□□ 0.01
COL4A4P53420 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC15.13■□□□□ 0.01
COL4A4P53420 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL4A4P53420 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL4A4P53420 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL4A4P53420 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL4A4P53420 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL4A4P53420 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
COL4A4P53420 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC15.12■□□□□ 0.01
COL4A4P53420 LINC00265-2P-201ENST00000413372 782 ntBASIC15.12■□□□□ 0.01
COL4A4P53420 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC15.12■□□□□ 0.01
COL4A4P53420 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
COL4A4P53420 HIST1H2APS2-201ENST00000454426 370 ntBASIC15.12■□□□□ 0.01
COL4A4P53420 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC15.12■□□□□ 0.01
COL4A4P53420 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC15.12■□□□□ 0.01
COL4A4P53420 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC15.12■□□□□ 0.01
COL4A4P53420 DUT-207ENST00000559416 635 ntTSL 2 BASIC15.12■□□□□ 0.01
COL4A4P53420 AC140658.4-201ENST00000561990 352 ntBASIC15.12■□□□□ 0.01
COL4A4P53420 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC15.12■□□□□ 0.01
COL4A4P53420 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC15.12■□□□□ 0.01
COL4A4P53420 FBXO36P1-201ENST00000579006 471 ntBASIC15.12■□□□□ 0.01
COL4A4P53420 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC15.12■□□□□ 0.01
COL4A4P53420 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC15.12■□□□□ 0.01
COL4A4P53420 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms