Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN4P29074 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN4P29074 HAL-202ENST00000538703 2637 ntTSL 2 BASIC14.77□□□□□ -0.05
PTPN4P29074 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN4P29074 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC14.77□□□□□ -0.05
PTPN4P29074 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 AC004241.5-201ENST00000623870 2448 ntBASIC14.76□□□□□ -0.05
PTPN4P29074 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
PTPN4P29074 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 FAM90A12P-201ENST00000519497 2375 ntBASIC14.76□□□□□ -0.05
PTPN4P29074 FAM90A24P-201ENST00000520792 2369 ntBASIC14.76□□□□□ -0.05
PTPN4P29074 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 LILRP1-201ENST00000444199 1370 ntBASIC14.76□□□□□ -0.05
PTPN4P29074 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
PTPN4P29074 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
PTPN4P29074 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 ANKRD19P-201ENST00000338192 862 ntBASIC14.76□□□□□ -0.05
PTPN4P29074 C1QBPP1-201ENST00000400117 770 ntBASIC14.76□□□□□ -0.05
PTPN4P29074 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.76□□□□□ -0.05
PTPN4P29074 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.76□□□□□ -0.05
PTPN4P29074 KLF2P4-201ENST00000451959 1225 ntBASIC14.76□□□□□ -0.05
PTPN4P29074 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.76□□□□□ -0.05
PTPN4P29074 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.76□□□□□ -0.05
PTPN4P29074 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.76□□□□□ -0.05
PTPN4P29074 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.76□□□□□ -0.05
PTPN4P29074 AC120045.2-201ENST00000567334 178 ntBASIC14.76□□□□□ -0.05
PTPN4P29074 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.76□□□□□ -0.05
PTPN4P29074 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.76□□□□□ -0.05
PTPN4P29074 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC14.76□□□□□ -0.05
PTPN4P29074 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.76□□□□□ -0.05
PTPN4P29074 AL033527.4-201ENST00000641026 673 ntBASIC14.76□□□□□ -0.05
PTPN4P29074 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 AC138969.2-201ENST00000532739 9932 ntBASIC14.76□□□□□ -0.05
PTPN4P29074 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
PTPN4P29074 AC068760.1-201ENST00000493579 1953 ntBASIC14.76□□□□□ -0.05
PTPN4P29074 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
PTPN4P29074 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
PTPN4P29074 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC14.76□□□□□ -0.05
PTPN4P29074 PDIA3P1-201ENST00000471856 1510 ntBASIC14.76□□□□□ -0.05
PTPN4P29074 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC14.76□□□□□ -0.05
PTPN4P29074 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
PTPN4P29074 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.75□□□□□ -0.05
PTPN4P29074 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
PTPN4P29074 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
PTPN4P29074 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC14.75□□□□□ -0.05
PTPN4P29074 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
PTPN4P29074 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.75□□□□□ -0.05
PTPN4P29074 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.75□□□□□ -0.05
PTPN4P29074 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
PTPN4P29074 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
PTPN4P29074 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC14.75□□□□□ -0.05
PTPN4P29074 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
PTPN4P29074 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.75□□□□□ -0.05
PTPN4P29074 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
PTPN4P29074 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.75□□□□□ -0.05
PTPN4P29074 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 AC005229.1-201ENST00000392885 409 ntBASIC14.75□□□□□ -0.05
PTPN4P29074 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
PTPN4P29074 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.75□□□□□ -0.05
PTPN4P29074 CTBP2P5-201ENST00000454986 1264 ntBASIC14.75□□□□□ -0.05
PTPN4P29074 VDAC1P7-201ENST00000462417 847 ntBASIC14.75□□□□□ -0.05
PTPN4P29074 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
PTPN4P29074 AC092658.1-201ENST00000505836 891 ntBASIC14.75□□□□□ -0.05
PTPN4P29074 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14.75□□□□□ -0.05
PTPN4P29074 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms