Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 AC020910.5-201ENST00000623668 1865 ntBASIC11.21□□□□□ -0.61
HLA-DMBP28068 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 MAPT-IT1-201ENST00000624111 3016 ntBASIC11.21□□□□□ -0.61
HLA-DMBP28068 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC11.21□□□□□ -0.61
HLA-DMBP28068 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 KRT8P35-201ENST00000483942 1338 ntBASIC11.21□□□□□ -0.61
HLA-DMBP28068 MRPL37P1-201ENST00000592451 1337 ntBASIC11.21□□□□□ -0.61
HLA-DMBP28068 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 OR8S1-201ENST00000310194 1080 ntBASIC11.21□□□□□ -0.61
HLA-DMBP28068 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC11.21□□□□□ -0.61
HLA-DMBP28068 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 ACTBP8-201ENST00000403258 1108 ntBASIC11.21□□□□□ -0.61
HLA-DMBP28068 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC11.21□□□□□ -0.61
HLA-DMBP28068 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
HLA-DMBP28068 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC11.21□□□□□ -0.61
HLA-DMBP28068 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 PIGL-212ENST00000581006 554 ntTSL 4 BASIC11.21□□□□□ -0.61
HLA-DMBP28068 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC11.21□□□□□ -0.61
HLA-DMBP28068 ATF5-205ENST00000600336 682 ntTSL 2 BASIC11.21□□□□□ -0.61
HLA-DMBP28068 AP005019.2-201ENST00000615104 511 ntBASIC11.21□□□□□ -0.61
HLA-DMBP28068 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC11.21□□□□□ -0.61
HLA-DMBP28068 IGHV3-72-202ENST00000621503 303 ntBASIC11.21□□□□□ -0.61
HLA-DMBP28068 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
HLA-DMBP28068 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC11.21□□□□□ -0.62
HLA-DMBP28068 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
HLA-DMBP28068 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
HLA-DMBP28068 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.62
HLA-DMBP28068 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
HLA-DMBP28068 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
HLA-DMBP28068 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
HLA-DMBP28068 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
HLA-DMBP28068 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
HLA-DMBP28068 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC11.21□□□□□ -0.62
HLA-DMBP28068 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.62
HLA-DMBP28068 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC11.21□□□□□ -0.62
HLA-DMBP28068 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
HLA-DMBP28068 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC11.21□□□□□ -0.62
HLA-DMBP28068 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC11.21□□□□□ -0.62
HLA-DMBP28068 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
HLA-DMBP28068 GOLGA8VP-201ENST00000559009 1798 ntBASIC11.21□□□□□ -0.62
HLA-DMBP28068 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC11.21□□□□□ -0.62
HLA-DMBP28068 MSTO2P-201ENST00000314835 1709 ntBASIC11.21□□□□□ -0.62
HLA-DMBP28068 AL359881.3-201ENST00000602640 1721 ntBASIC11.21□□□□□ -0.62
HLA-DMBP28068 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 AC020910.6-201ENST00000623084 1459 ntBASIC11.2□□□□□ -0.62
HLA-DMBP28068 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 AL138725.1-201ENST00000407347 1314 ntBASIC11.2□□□□□ -0.62
HLA-DMBP28068 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 RN7SKP230-201ENST00000365642 335 ntBASIC11.2□□□□□ -0.62
HLA-DMBP28068 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 TTTY23B-201ENST00000442790 549 ntBASIC11.2□□□□□ -0.62
HLA-DMBP28068 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
HLA-DMBP28068 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 WFDC1-204ENST00000613603 549 ntBASIC11.2□□□□□ -0.62
HLA-DMBP28068 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC11.2□□□□□ -0.62
HLA-DMBP28068 CU634019.7-201ENST00000624153 1185 ntBASIC11.2□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms