Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RPSAP12-201ENST00000435879 888 ntBASIC17.7■□□□□ 0.42
COL5A3P25940 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC17.7■□□□□ 0.42
COL5A3P25940 AL136084.1-201ENST00000449172 318 ntBASIC17.7■□□□□ 0.42
COL5A3P25940 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC17.7■□□□□ 0.42
COL5A3P25940 KRT8P34-201ENST00000577607 1044 ntBASIC17.7■□□□□ 0.42
COL5A3P25940 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC17.7■□□□□ 0.42
COL5A3P25940 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC17.7■□□□□ 0.42
COL5A3P25940 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC17.7■□□□□ 0.42
COL5A3P25940 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
COL5A3P25940 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A3P25940 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A3P25940 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC17.7■□□□□ 0.42
COL5A3P25940 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A3P25940 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC17.7■□□□□ 0.42
COL5A3P25940 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC17.7■□□□□ 0.42
COL5A3P25940 POLL-206ENST00000370172 2308 ntTSL 2 BASIC17.7■□□□□ 0.42
COL5A3P25940 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC17.7■□□□□ 0.42
COL5A3P25940 AL590824.1-201ENST00000403828 1349 ntBASIC17.7■□□□□ 0.42
COL5A3P25940 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A3P25940 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL5A3P25940 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A3P25940 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC17.69■□□□□ 0.42
COL5A3P25940 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC17.69■□□□□ 0.42
COL5A3P25940 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
COL5A3P25940 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A3P25940 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC17.69■□□□□ 0.42
COL5A3P25940 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC17.69■□□□□ 0.42
COL5A3P25940 AC078814.4-201ENST00000546650 327 ntBASIC17.69■□□□□ 0.42
COL5A3P25940 MIR8071-1-201ENST00000616769 65 ntBASIC17.69■□□□□ 0.42
COL5A3P25940 MIR8071-2-201ENST00000616772 65 ntBASIC17.69■□□□□ 0.42
COL5A3P25940 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
COL5A3P25940 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
COL5A3P25940 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A3P25940 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
COL5A3P25940 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.69■□□□□ 0.42
COL5A3P25940 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A3P25940 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A3P25940 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.69■□□□□ 0.42
COL5A3P25940 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A3P25940 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
COL5A3P25940 U73169.1-201ENST00000395152 367 ntBASIC17.69■□□□□ 0.42
COL5A3P25940 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A3P25940 RPL18AP16-201ENST00000424057 531 ntBASIC17.69■□□□□ 0.42
COL5A3P25940 SRP14-208ENST00000560773 468 ntTSL 3 BASIC17.69■□□□□ 0.42
COL5A3P25940 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC17.69■□□□□ 0.42
COL5A3P25940 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
COL5A3P25940 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC17.69■□□□□ 0.42
COL5A3P25940 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC17.69■□□□□ 0.42
COL5A3P25940 AL139424.3-202ENST00000641619 917 ntBASIC17.69■□□□□ 0.42
COL5A3P25940 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A3P25940 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL5A3P25940 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC17.69■□□□□ 0.42
COL5A3P25940 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC17.69■□□□□ 0.42
COL5A3P25940 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.69■□□□□ 0.42
COL5A3P25940 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC17.69■□□□□ 0.42
COL5A3P25940 PAUPAR-201ENST00000630360 2965 ntBASIC17.69■□□□□ 0.42
COL5A3P25940 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
COL5A3P25940 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC17.69■□□□□ 0.42
COL5A3P25940 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A3P25940 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A3P25940 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A3P25940 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
COL5A3P25940 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A3P25940 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A3P25940 AC064850.1-201ENST00000413279 1398 ntBASIC17.68■□□□□ 0.42
COL5A3P25940 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
COL5A3P25940 AC023824.1-201ENST00000562945 2975 ntBASIC17.68■□□□□ 0.42
COL5A3P25940 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
COL5A3P25940 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A3P25940 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A3P25940 MIR1307-201ENST00000408840 149 ntBASIC17.68■□□□□ 0.42
COL5A3P25940 PHBP10-201ENST00000416467 784 ntBASIC17.68■□□□□ 0.42
COL5A3P25940 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC17.68■□□□□ 0.42
COL5A3P25940 AC133141.1-201ENST00000443015 339 ntBASIC17.68■□□□□ 0.42
COL5A3P25940 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC17.68■□□□□ 0.42
COL5A3P25940 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC17.68■□□□□ 0.42
COL5A3P25940 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC17.68■□□□□ 0.42
COL5A3P25940 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC17.68■□□□□ 0.42
COL5A3P25940 MIR4326-201ENST00000582203 59 ntBASIC17.68■□□□□ 0.42
COL5A3P25940 FTLP5-201ENST00000586853 534 ntBASIC17.68■□□□□ 0.42
COL5A3P25940 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC17.68■□□□□ 0.42
COL5A3P25940 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
COL5A3P25940 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC17.68■□□□□ 0.42
COL5A3P25940 FGD5P1-202ENST00000614866 2498 ntBASIC17.68■□□□□ 0.42
COL5A3P25940 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
COL5A3P25940 FAM226B-201ENST00000602508 1490 ntBASIC17.68■□□□□ 0.42
COL5A3P25940 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC17.68■□□□□ 0.42
COL5A3P25940 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL5A3P25940 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.68■□□□□ 0.42
COL5A3P25940 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
COL5A3P25940 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC17.67■□□□□ 0.42
COL5A3P25940 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC17.67■□□□□ 0.42
COL5A3P25940 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL5A3P25940 KRT18P33-201ENST00000398525 1043 ntBASIC17.67■□□□□ 0.42
COL5A3P25940 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC17.67■□□□□ 0.42
COL5A3P25940 AC004801.1-201ENST00000549557 360 ntBASIC17.67■□□□□ 0.42
COL5A3P25940 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
COL5A3P25940 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC17.67■□□□□ 0.42
COL5A3P25940 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms