Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TPST2P1-201ENST00000564073 1102 ntBASIC14.01□□□□□ -0.17
VPS13AQ96RL7 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 CSH2-207ENST00000613718 666 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 Z82244.2-201ENST00000632196 448 ntBASIC14.01□□□□□ -0.17
VPS13AQ96RL7 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS13AQ96RL7 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS13AQ96RL7 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS13AQ96RL7 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS13AQ96RL7 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
VPS13AQ96RL7 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS13AQ96RL7 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC14□□□□□ -0.17
VPS13AQ96RL7 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS13AQ96RL7 LINC01833-204ENST00000444871 581 ntTSL 3 BASIC14□□□□□ -0.17
VPS13AQ96RL7 RNU1-80P-201ENST00000459500 161 ntBASIC14□□□□□ -0.17
VPS13AQ96RL7 PRSS3P1-201ENST00000503996 742 ntBASIC14□□□□□ -0.17
VPS13AQ96RL7 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14□□□□□ -0.17
VPS13AQ96RL7 CLPP-205ENST00000596605 646 ntTSL 2 BASIC14□□□□□ -0.17
VPS13AQ96RL7 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC14□□□□□ -0.17
VPS13AQ96RL7 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC14□□□□□ -0.17
VPS13AQ96RL7 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
VPS13AQ96RL7 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
VPS13AQ96RL7 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14□□□□□ -0.17
VPS13AQ96RL7 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14□□□□□ -0.17
VPS13AQ96RL7 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14□□□□□ -0.17
VPS13AQ96RL7 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14□□□□□ -0.17
VPS13AQ96RL7 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC14□□□□□ -0.17
VPS13AQ96RL7 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
VPS13AQ96RL7 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS13AQ96RL7 AC000077.1-201ENST00000420012 953 ntBASIC14□□□□□ -0.17
VPS13AQ96RL7 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
VPS13AQ96RL7 RN7SL684P-201ENST00000465665 294 ntBASIC14□□□□□ -0.17
VPS13AQ96RL7 AC022121.1-201ENST00000484584 579 ntBASIC14□□□□□ -0.17
VPS13AQ96RL7 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC14□□□□□ -0.17
VPS13AQ96RL7 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC14□□□□□ -0.17
VPS13AQ96RL7 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14□□□□□ -0.17
VPS13AQ96RL7 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS13AQ96RL7 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
VPS13AQ96RL7 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS13AQ96RL7 AC073869.1-201ENST00000415574 2762 ntBASIC14□□□□□ -0.17
VPS13AQ96RL7 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS13AQ96RL7 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14□□□□□ -0.17
VPS13AQ96RL7 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC14□□□□□ -0.17
VPS13AQ96RL7 F10-203ENST00000409306 1450 ntTSL 3 BASIC14□□□□□ -0.17
VPS13AQ96RL7 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14□□□□□ -0.17
VPS13AQ96RL7 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
VPS13AQ96RL7 AL627095.1-201ENST00000414775 321 ntBASIC13.99□□□□□ -0.17
VPS13AQ96RL7 MROH4P-201ENST00000431302 1578 ntBASIC13.99□□□□□ -0.17
VPS13AQ96RL7 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 AL121790.2-202ENST00000556024 363 ntTSL 5 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 GOLGA8UP-201ENST00000527159 1755 ntBASIC13.99□□□□□ -0.17
VPS13AQ96RL7 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 KRT8P18-201ENST00000413425 1445 ntBASIC13.99□□□□□ -0.17
VPS13AQ96RL7 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 GH1-203ENST00000351388 685 ntTSL 2 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 AL137244.1-201ENST00000422931 865 ntBASIC13.99□□□□□ -0.17
VPS13AQ96RL7 AC093106.1-201ENST00000437271 352 ntBASIC13.99□□□□□ -0.17
VPS13AQ96RL7 LINC01823-204ENST00000438722 794 ntTSL 3 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 AC099328.1-201ENST00000498809 1030 ntBASIC13.99□□□□□ -0.17
VPS13AQ96RL7 IGHVIII-5-2-201ENST00000522505 261 ntBASIC13.99□□□□□ -0.17
VPS13AQ96RL7 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC13.99□□□□□ -0.17
VPS13AQ96RL7 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC13.99□□□□□ -0.17
VPS13AQ96RL7 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 TCEAL5-201ENST00000372680 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 MARK2P17-201ENST00000498560 841 ntBASIC13.99□□□□□ -0.17
VPS13AQ96RL7 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 GRAMD4P6-201ENST00000556999 244 ntBASIC13.99□□□□□ -0.17
VPS13AQ96RL7 AC145285.5-201ENST00000562217 361 ntBASIC13.99□□□□□ -0.17
VPS13AQ96RL7 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC13.99□□□□□ -0.17
VPS13AQ96RL7 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms