Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC14.79□□□□□ -0.04
PTPN4P29074 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.79□□□□□ -0.04
PTPN4P29074 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
PTPN4P29074 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTPN4P29074 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC14.78□□□□□ -0.04
PTPN4P29074 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
PTPN4P29074 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
PTPN4P29074 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
PTPN4P29074 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.78□□□□□ -0.04
PTPN4P29074 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
PTPN4P29074 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
PTPN4P29074 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
PTPN4P29074 TCAM1P-207ENST00000485295 1537 ntBASIC14.78□□□□□ -0.04
PTPN4P29074 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
PTPN4P29074 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.78□□□□□ -0.04
PTPN4P29074 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 AC114271.1-201ENST00000612689 2813 ntBASIC14.78□□□□□ -0.04
PTPN4P29074 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.78□□□□□ -0.04
PTPN4P29074 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
PTPN4P29074 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
PTPN4P29074 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
PTPN4P29074 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.78□□□□□ -0.04
PTPN4P29074 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.78□□□□□ -0.04
PTPN4P29074 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.78□□□□□ -0.04
PTPN4P29074 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC14.78□□□□□ -0.04
PTPN4P29074 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.78□□□□□ -0.04
PTPN4P29074 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.78□□□□□ -0.04
PTPN4P29074 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.78□□□□□ -0.04
PTPN4P29074 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.78□□□□□ -0.04
PTPN4P29074 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 AGGF1P1-201ENST00000509500 2073 ntBASIC14.78□□□□□ -0.04
PTPN4P29074 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 AC019294.4-201ENST00000561777 2905 ntBASIC14.78□□□□□ -0.04
PTPN4P29074 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.78□□□□□ -0.04
PTPN4P29074 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC14.78□□□□□ -0.04
PTPN4P29074 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PTPN4P29074 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
PTPN4P29074 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.04
PTPN4P29074 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN4P29074 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN4P29074 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN4P29074 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN4P29074 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN4P29074 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
PTPN4P29074 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN4P29074 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.77□□□□□ -0.04
PTPN4P29074 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN4P29074 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN4P29074 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN4P29074 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN4P29074 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.04
PTPN4P29074 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN4P29074 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN4P29074 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC14.77□□□□□ -0.04
PTPN4P29074 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN4P29074 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN4P29074 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN4P29074 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.04
PTPN4P29074 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
PTPN4P29074 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.77□□□□□ -0.05
PTPN4P29074 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.77□□□□□ -0.05
PTPN4P29074 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14.77□□□□□ -0.05
PTPN4P29074 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN4P29074 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN4P29074 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.77□□□□□ -0.05
PTPN4P29074 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN4P29074 PTP4A1P2-201ENST00000546033 454 ntBASIC14.77□□□□□ -0.05
PTPN4P29074 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN4P29074 AC124283.3-201ENST00000570869 594 ntBASIC14.77□□□□□ -0.05
PTPN4P29074 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC14.77□□□□□ -0.05
PTPN4P29074 AL049840.4-201ENST00000602422 811 ntBASIC14.77□□□□□ -0.05
PTPN4P29074 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.77□□□□□ -0.05
PTPN4P29074 AL645728.2-202ENST00000641679 227 ntBASIC14.77□□□□□ -0.05
PTPN4P29074 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN4P29074 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN4P29074 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.05
PTPN4P29074 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC14.77□□□□□ -0.05
PTPN4P29074 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.77□□□□□ -0.05
PTPN4P29074 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC14.77□□□□□ -0.05
PTPN4P29074 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.77□□□□□ -0.05
PTPN4P29074 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN4P29074 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN4P29074 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PTPN4P29074 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms