Protein–RNA interactions for Protein: P18846

ATF1, Cyclic AMP-dependent transcription factor ATF-1, humanhuman

Predictions only

Length 271 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF1P18846 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
ATF1P18846 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
ATF1P18846 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
ATF1P18846 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC12.91□□□□□ -0.34
ATF1P18846 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC12.9□□□□□ -0.34
ATF1P18846 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC12.9□□□□□ -0.34
ATF1P18846 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC12.9□□□□□ -0.34
ATF1P18846 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
ATF1P18846 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
ATF1P18846 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC12.9□□□□□ -0.34
ATF1P18846 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
ATF1P18846 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC12.9□□□□□ -0.34
ATF1P18846 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
ATF1P18846 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC12.9□□□□□ -0.34
ATF1P18846 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC12.9□□□□□ -0.34
ATF1P18846 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 RNU1-114P-201ENST00000365297 166 ntBASIC12.9□□□□□ -0.34
ATF1P18846 B9D1-203ENST00000395615 805 ntTSL 3 BASIC12.9□□□□□ -0.34
ATF1P18846 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
ATF1P18846 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC12.9□□□□□ -0.34
ATF1P18846 AC026434.2-201ENST00000506094 1078 ntBASIC12.9□□□□□ -0.34
ATF1P18846 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC12.9□□□□□ -0.34
ATF1P18846 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC12.9□□□□□ -0.34
ATF1P18846 IFT20-206ENST00000578122 834 ntTSL 2 BASIC12.9□□□□□ -0.34
ATF1P18846 IFT20-208ENST00000578985 831 ntTSL 3 BASIC12.9□□□□□ -0.34
ATF1P18846 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC12.9□□□□□ -0.34
ATF1P18846 WDR88-203ENST00000592765 651 ntTSL 5 BASIC12.9□□□□□ -0.34
ATF1P18846 AC099568.2-201ENST00000609194 695 ntBASIC12.9□□□□□ -0.34
ATF1P18846 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 MIR8072-201ENST00000614241 80 ntBASIC12.9□□□□□ -0.34
ATF1P18846 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC12.9□□□□□ -0.34
ATF1P18846 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC12.9□□□□□ -0.34
ATF1P18846 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
ATF1P18846 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
ATF1P18846 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 HPD-204ENST00000543163 1709 ntTSL 5 BASIC12.9□□□□□ -0.34
ATF1P18846 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC12.9□□□□□ -0.34
ATF1P18846 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
ATF1P18846 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC12.9□□□□□ -0.34
ATF1P18846 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
ATF1P18846 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
ATF1P18846 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
ATF1P18846 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
ATF1P18846 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.35
ATF1P18846 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ATF1P18846 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC12.89□□□□□ -0.35
ATF1P18846 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ATF1P18846 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ATF1P18846 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
ATF1P18846 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
ATF1P18846 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
ATF1P18846 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
ATF1P18846 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
ATF1P18846 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ATF1P18846 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
ATF1P18846 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC12.89□□□□□ -0.35
ATF1P18846 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC12.89□□□□□ -0.35
ATF1P18846 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
ATF1P18846 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC12.89□□□□□ -0.35
ATF1P18846 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
ATF1P18846 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC12.89□□□□□ -0.35
ATF1P18846 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ATF1P18846 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ATF1P18846 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC12.89□□□□□ -0.35
ATF1P18846 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
ATF1P18846 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ATF1P18846 AL442647.2-201ENST00000429864 857 ntBASIC12.89□□□□□ -0.35
ATF1P18846 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
ATF1P18846 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC12.89□□□□□ -0.35
ATF1P18846 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
ATF1P18846 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC12.89□□□□□ -0.35
ATF1P18846 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
ATF1P18846 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC12.89□□□□□ -0.35
ATF1P18846 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC12.89□□□□□ -0.35
ATF1P18846 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC12.89□□□□□ -0.35
ATF1P18846 DUT-210ENST00000559935 569 ntTSL 3 BASIC12.89□□□□□ -0.35
ATF1P18846 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
ATF1P18846 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms