Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL3A1P02461 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL3A1P02461 AC015909.5-201ENST00000624336 2266 ntBASIC18.86■□□□□ 0.61
COL3A1P02461 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL3A1P02461 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL3A1P02461 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL3A1P02461 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL3A1P02461 AC019109.1-201ENST00000401725 1874 ntBASIC18.86■□□□□ 0.61
COL3A1P02461 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC18.86■□□□□ 0.61
COL3A1P02461 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
COL3A1P02461 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
COL3A1P02461 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC18.85■□□□□ 0.61
COL3A1P02461 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
COL3A1P02461 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC18.85■□□□□ 0.61
COL3A1P02461 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 CELP-201ENST00000411440 1249 ntTSL 5 BASIC18.85■□□□□ 0.61
COL3A1P02461 RPSAP31-201ENST00000416648 895 ntBASIC18.85■□□□□ 0.61
COL3A1P02461 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC18.85■□□□□ 0.61
COL3A1P02461 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC18.85■□□□□ 0.61
COL3A1P02461 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC18.85■□□□□ 0.61
COL3A1P02461 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC18.85■□□□□ 0.61
COL3A1P02461 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC18.85■□□□□ 0.61
COL3A1P02461 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC18.85■□□□□ 0.61
COL3A1P02461 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC18.85■□□□□ 0.61
COL3A1P02461 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC18.85■□□□□ 0.61
COL3A1P02461 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC18.85■□□□□ 0.61
COL3A1P02461 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
COL3A1P02461 AP001184.1-201ENST00000637936 376 ntBASIC18.85■□□□□ 0.61
COL3A1P02461 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
COL3A1P02461 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 AL139158.3-201ENST00000641212 1562 ntBASIC18.85■□□□□ 0.61
COL3A1P02461 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
COL3A1P02461 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
COL3A1P02461 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 AC006372.4-201ENST00000624122 1543 ntBASIC18.85■□□□□ 0.61
COL3A1P02461 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC18.85■□□□□ 0.61
COL3A1P02461 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL3A1P02461 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC18.85■□□□□ 0.61
COL3A1P02461 GOLGA8EP-201ENST00000530246 1959 ntBASIC18.84■□□□□ 0.61
COL3A1P02461 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL3A1P02461 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL3A1P02461 RCC2P1-201ENST00000452257 1476 ntBASIC18.84■□□□□ 0.61
COL3A1P02461 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL3A1P02461 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL3A1P02461 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL3A1P02461 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL3A1P02461 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL3A1P02461 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
COL3A1P02461 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC18.84■□□□□ 0.61
COL3A1P02461 NME4-203ENST00000397722 1232 ntTSL 2 BASIC18.84■□□□□ 0.61
COL3A1P02461 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC18.84■□□□□ 0.61
COL3A1P02461 ERP29P1-201ENST00000442902 706 ntBASIC18.84■□□□□ 0.61
COL3A1P02461 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC18.84■□□□□ 0.61
COL3A1P02461 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
COL3A1P02461 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC18.84■□□□□ 0.61
COL3A1P02461 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
COL3A1P02461 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL3A1P02461 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC18.84■□□□□ 0.61
COL3A1P02461 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL3A1P02461 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC18.84■□□□□ 0.61
COL3A1P02461 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL3A1P02461 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL3A1P02461 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL3A1P02461 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC18.84■□□□□ 0.61
COL3A1P02461 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL3A1P02461 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
COL3A1P02461 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL3A1P02461 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL3A1P02461 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL3A1P02461 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
COL3A1P02461 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL3A1P02461 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC18.84■□□□□ 0.61
COL3A1P02461 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC18.84■□□□□ 0.61
COL3A1P02461 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC18.84■□□□□ 0.61
COL3A1P02461 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC18.84■□□□□ 0.61
COL3A1P02461 AC098935.1-201ENST00000446057 611 ntBASIC18.84■□□□□ 0.61
COL3A1P02461 RN7SL564P-201ENST00000496309 250 ntBASIC18.84■□□□□ 0.61
COL3A1P02461 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL3A1P02461 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC18.84■□□□□ 0.61
COL3A1P02461 AC087045.2-201ENST00000606279 1003 ntBASIC18.84■□□□□ 0.61
COL3A1P02461 AC103810.10-201ENST00000606504 343 ntBASIC18.84■□□□□ 0.61
COL3A1P02461 HPX-213ENST00000615166 826 ntTSL 5 BASIC18.84■□□□□ 0.61
COL3A1P02461 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms