Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SLC28A1O00337 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.12□□□□□ -0.15
SLC28A1O00337 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SLC28A1O00337 DGCR5-201ENST00000399539 862 ntBASIC14.12□□□□□ -0.15
SLC28A1O00337 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SLC28A1O00337 AC011495.1-201ENST00000498085 584 ntBASIC14.12□□□□□ -0.15
SLC28A1O00337 AC027237.1-201ENST00000560942 655 ntBASIC14.12□□□□□ -0.15
SLC28A1O00337 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.12□□□□□ -0.15
SLC28A1O00337 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SLC28A1O00337 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.12□□□□□ -0.15
SLC28A1O00337 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SLC28A1O00337 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SLC28A1O00337 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
SLC28A1O00337 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SLC28A1O00337 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SLC28A1O00337 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
SLC28A1O00337 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC14.12□□□□□ -0.15
SLC28A1O00337 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SLC28A1O00337 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC14.12□□□□□ -0.15
SLC28A1O00337 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SLC28A1O00337 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SLC28A1O00337 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SLC28A1O00337 AC064801.2-201ENST00000625052 1303 ntBASIC14.12□□□□□ -0.15
SLC28A1O00337 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SLC28A1O00337 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.12□□□□□ -0.15
SLC28A1O00337 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
SLC28A1O00337 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC14.11□□□□□ -0.15
SLC28A1O00337 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC14.11□□□□□ -0.15
SLC28A1O00337 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
SLC28A1O00337 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.11□□□□□ -0.15
SLC28A1O00337 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.11□□□□□ -0.15
SLC28A1O00337 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SLC28A1O00337 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SLC28A1O00337 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
SLC28A1O00337 AL355864.2-201ENST00000447420 863 ntBASIC14.11□□□□□ -0.15
SLC28A1O00337 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.11□□□□□ -0.15
SLC28A1O00337 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 SPCS2P1-201ENST00000561636 679 ntBASIC14.11□□□□□ -0.15
SLC28A1O00337 AC106820.3-201ENST00000561653 397 ntBASIC14.11□□□□□ -0.15
SLC28A1O00337 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.11□□□□□ -0.15
SLC28A1O00337 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.11□□□□□ -0.15
SLC28A1O00337 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
SLC28A1O00337 AC010319.3-201ENST00000597028 470 ntBASIC14.11□□□□□ -0.15
SLC28A1O00337 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.11□□□□□ -0.15
SLC28A1O00337 AC009093.10-201ENST00000641956 1442 ntBASIC14.11□□□□□ -0.15
SLC28A1O00337 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
SLC28A1O00337 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
SLC28A1O00337 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
SLC28A1O00337 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SLC28A1O00337 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.11□□□□□ -0.15
SLC28A1O00337 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
SLC28A1O00337 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SLC28A1O00337 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC14.11□□□□□ -0.15
SLC28A1O00337 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SLC28A1O00337 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SLC28A1O00337 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
SLC28A1O00337 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SLC28A1O00337 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.1□□□□□ -0.15
SLC28A1O00337 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SLC28A1O00337 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SLC28A1O00337 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
SLC28A1O00337 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SLC28A1O00337 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SLC28A1O00337 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SLC28A1O00337 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SLC28A1O00337 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SLC28A1O00337 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.1□□□□□ -0.15
SLC28A1O00337 AC009093.2-202ENST00000620513 2079 ntBASIC14.1□□□□□ -0.15
SLC28A1O00337 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SLC28A1O00337 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SLC28A1O00337 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SLC28A1O00337 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SLC28A1O00337 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC14.1□□□□□ -0.15
SLC28A1O00337 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.1□□□□□ -0.15
SLC28A1O00337 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms