Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 NCLP1-201ENST00000445357 1963 ntBASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 USP17L6P-201ENST00000382470 1197 ntBASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 DGCR5-201ENST00000399539 862 ntBASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 PIN1P1-201ENST00000412108 996 ntBASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 TDH-203ENST00000531764 1110 ntBASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 TP53TG3HP-202ENST00000569755 579 ntBASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 AC002472.3-201ENST00000640124 621 ntBASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIMA1Q9UHB6 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 CICP12-201ENST00000455801 843 ntBASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 AP001889.1-201ENST00000525414 633 ntBASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 AC190387.1-201ENST00000551683 408 ntBASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 MIR4683-201ENST00000579659 81 ntBASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 ECM1P1-201ENST00000604092 1279 ntBASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIMA1Q9UHB6 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.14
LIMA1Q9UHB6 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC15.96■□□□□ 0.14
LIMA1Q9UHB6 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 GOLGA6L11P-201ENST00000417252 1298 ntBASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 GAS5-209ENST00000430245 723 ntTSL 3 BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 AC002472.2-201ENST00000442739 958 ntBASIC15.95■□□□□ 0.14
LIMA1Q9UHB6 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms