Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 RGS5-214ENST00000429865 754 ntTSL 3 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 PFN1P12-201ENST00000455938 534 ntBASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 NOP2-211ENST00000540228 668 ntTSL 2 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 EEF1DP1-201ENST00000585891 896 ntBASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 MIR6074-201ENST00000612054 107 ntBASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CHMP4CQ96CF2 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 FTLP10-202ENST00000505798 471 ntBASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 AC100850.1-201ENST00000506768 649 ntBASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 VPS18-202ENST00000558474 873 ntTSL 3 BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 EMC4-209ENST00000559421 497 ntTSL 2 BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 AC005730.2-201ENST00000564549 1184 ntBASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 MIR3615-201ENST00000581999 87 ntBASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 MIR6787-201ENST00000616675 61 ntBASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 TKT-201ENST00000296289 1931 ntTSL 5 BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CHMP4CQ96CF2 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC17.52■□□□□ 0.39
CHMP4CQ96CF2 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CHMP4CQ96CF2 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC17.52■□□□□ 0.39
CHMP4CQ96CF2 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
CHMP4CQ96CF2 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CHMP4CQ96CF2 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC17.52■□□□□ 0.39
CHMP4CQ96CF2 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
CHMP4CQ96CF2 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
CHMP4CQ96CF2 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CHMP4CQ96CF2 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHMP4CQ96CF2 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.39
CHMP4CQ96CF2 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHMP4CQ96CF2 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
CHMP4CQ96CF2 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC17.52■□□□□ 0.39
CHMP4CQ96CF2 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CHMP4CQ96CF2 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHMP4CQ96CF2 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHMP4CQ96CF2 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CHMP4CQ96CF2 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 AC092135.3-201ENST00000624151 1846 ntBASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 MX1-218ENST00000619682 1980 ntTSL 5 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 AC003102.2-201ENST00000589195 1469 ntBASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 COCH-203ENST00000460581 2688 ntTSL 2 BASIC17.51■□□□□ 0.39
CHMP4CQ96CF2 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 172.2 ms