Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.28□□□□□ -0.12
HNF4AP41235 AC103988.2-201ENST00000561804 725 ntBASIC14.28□□□□□ -0.12
HNF4AP41235 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
HNF4AP41235 OR10B1P-201ENST00000601666 907 ntBASIC14.28□□□□□ -0.12
HNF4AP41235 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
HNF4AP41235 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.28□□□□□ -0.12
HNF4AP41235 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC14.28□□□□□ -0.12
HNF4AP41235 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
HNF4AP41235 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.28□□□□□ -0.12
HNF4AP41235 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
HNF4AP41235 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
HNF4AP41235 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC14.28□□□□□ -0.12
HNF4AP41235 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.27□□□□□ -0.12
HNF4AP41235 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HNF4AP41235 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HNF4AP41235 AC139712.1-201ENST00000378256 1875 ntBASIC14.27□□□□□ -0.12
HNF4AP41235 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
HNF4AP41235 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HNF4AP41235 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HNF4AP41235 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
HNF4AP41235 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.27□□□□□ -0.12
HNF4AP41235 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14.27□□□□□ -0.12
HNF4AP41235 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.27□□□□□ -0.12
HNF4AP41235 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.27□□□□□ -0.12
HNF4AP41235 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HNF4AP41235 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HNF4AP41235 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HNF4AP41235 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HNF4AP41235 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.27□□□□□ -0.13
HNF4AP41235 AC079776.1-201ENST00000401540 1152 ntBASIC14.27□□□□□ -0.13
HNF4AP41235 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HNF4AP41235 FAM8A4P-201ENST00000435433 1213 ntBASIC14.27□□□□□ -0.13
HNF4AP41235 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.27□□□□□ -0.13
HNF4AP41235 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC14.27□□□□□ -0.13
HNF4AP41235 PUDPP3-201ENST00000445368 636 ntBASIC14.27□□□□□ -0.13
HNF4AP41235 ACA64.2-201ENST00000459014 129 ntBASIC14.27□□□□□ -0.13
HNF4AP41235 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
HNF4AP41235 SNX29P1-201ENST00000548357 1007 ntBASIC14.27□□□□□ -0.13
HNF4AP41235 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HNF4AP41235 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC14.27□□□□□ -0.13
HNF4AP41235 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC14.27□□□□□ -0.13
HNF4AP41235 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC14.27□□□□□ -0.13
HNF4AP41235 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.27□□□□□ -0.13
HNF4AP41235 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HNF4AP41235 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
HNF4AP41235 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.27□□□□□ -0.13
HNF4AP41235 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
HNF4AP41235 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.27□□□□□ -0.13
HNF4AP41235 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
HNF4AP41235 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HNF4AP41235 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HNF4AP41235 AL359183.1-201ENST00000623796 2132 ntBASIC14.27□□□□□ -0.13
HNF4AP41235 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.27□□□□□ -0.13
HNF4AP41235 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HNF4AP41235 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
HNF4AP41235 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.27□□□□□ -0.13
HNF4AP41235 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
HNF4AP41235 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HNF4AP41235 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HNF4AP41235 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.27□□□□□ -0.13
HNF4AP41235 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HNF4AP41235 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HNF4AP41235 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HNF4AP41235 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.26□□□□□ -0.13
HNF4AP41235 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
HNF4AP41235 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HNF4AP41235 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.26□□□□□ -0.13
HNF4AP41235 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
HNF4AP41235 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.26□□□□□ -0.13
HNF4AP41235 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HNF4AP41235 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.26□□□□□ -0.13
HNF4AP41235 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HNF4AP41235 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
HNF4AP41235 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
HNF4AP41235 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.26□□□□□ -0.13
HNF4AP41235 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HNF4AP41235 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HNF4AP41235 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HNF4AP41235 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.26□□□□□ -0.13
HNF4AP41235 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.26□□□□□ -0.13
HNF4AP41235 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HNF4AP41235 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.26□□□□□ -0.13
HNF4AP41235 MIR1909-201ENST00000411312 80 ntBASIC14.26□□□□□ -0.13
HNF4AP41235 CNN2P8-201ENST00000421872 913 ntBASIC14.26□□□□□ -0.13
HNF4AP41235 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.26□□□□□ -0.13
HNF4AP41235 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC14.26□□□□□ -0.13
HNF4AP41235 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HNF4AP41235 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HNF4AP41235 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.26□□□□□ -0.13
HNF4AP41235 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.26□□□□□ -0.13
HNF4AP41235 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.26□□□□□ -0.13
HNF4AP41235 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC14.26□□□□□ -0.13
HNF4AP41235 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.26□□□□□ -0.13
HNF4AP41235 AC106886.1-201ENST00000568660 600 ntBASIC14.26□□□□□ -0.13
HNF4AP41235 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 134.5 ms