Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 KRT18P5-201ENST00000436075 1291 ntBASIC9.05□□□□□ -0.96
LINC00643Q86TS7 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 DENND3-207ENST00000518347 850 ntTSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 OAS3-207ENST00000551007 998 ntTSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 INO80E-214ENST00000620599 515 ntTSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 C2orf69-201ENST00000319974 3728 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 NDRG4-204ENST00000394282 3626 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 PNMA3-203ENST00000619635 3627 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 MXRA5Y-201ENST00000420610 8000 ntBASIC9.05□□□□□ -0.96
LINC00643Q86TS7 NSD2-205ENST00000382892 7706 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 AL135999.1-201ENST00000555968 3243 ntTSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 ASB2-203ENST00000555019 2842 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 FAM200B-223ENST00000622362 4377 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 FAM95C-205ENST00000637556 2421 ntAPPRIS P5 TSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 MYADML-201ENST00000474610 2147 ntBASIC9.05□□□□□ -0.96
LINC00643Q86TS7 ZNF239-205ENST00000535642 1904 ntAPPRIS P1 TSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 SPATA31C1-202ENST00000602681 1927 ntTSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 PNMA5-201ENST00000361887 3197 ntAPPRIS P2 TSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 ARHGAP6-201ENST00000303025 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 AIPL1-201ENST00000250087 2783 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 ARAP1-209ENST00000455638 2683 ntTSL 5 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 NSUN5P2-203ENST00000457352 1529 ntBASIC9.05□□□□□ -0.96
LINC00643Q86TS7 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 CICP19-201ENST00000632944 2357 ntBASIC9.05□□□□□ -0.96
LINC00643Q86TS7 TUBB8P4-201ENST00000511806 1324 ntBASIC9.05□□□□□ -0.96
LINC00643Q86TS7 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 AL031432.4-201ENST00000641729 2190 ntBASIC9.05□□□□□ -0.96
LINC00643Q86TS7 NOP2-212ENST00000541778 3038 ntTSL 2 BASIC9.05□□□□□ -0.96
LINC00643Q86TS7 C1GALT1-205ENST00000436587 6235 ntAPPRIS P1 TSL 5 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 DGKH-203ENST00000379274 4202 ntTSL 2 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 AR-203ENST00000396044 10221 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 CUL9-201ENST00000252050 7780 ntAPPRIS P1 TSL 5 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 TCF4-276ENST00000635822 7805 ntTSL 5 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 SEPT9-204ENST00000427180 3635 ntTSL 2 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 SLC25A24-203ENST00000565488 4271 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 ZNF133-201ENST00000316358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 CACNA1F-201ENST00000323022 6037 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 PMPCAP1-201ENST00000508114 1576 ntBASIC9.04□□□□□ -0.96
LINC00643Q86TS7 SLC37A2-201ENST00000308074 2696 ntAPPRIS P3 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 MARCH10-209ENST00000583600 3214 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 AC009123.1-202ENST00000565643 2551 ntTSL 2 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 NPAP1-201ENST00000329468 7526 ntAPPRIS P1 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 CCNG1-201ENST00000340828 2458 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 NEU3-204ENST00000531509 2468 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 GOLGA3-202ENST00000450791 8870 ntAPPRIS P3 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 PCDHB15-201ENST00000231173 4017 ntAPPRIS P1 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 AC007663.1-201ENST00000438948 1240 ntBASIC9.04□□□□□ -0.96
LINC00643Q86TS7 DANCR-204ENST00000444958 709 ntTSL 3 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 PHKG1P2-201ENST00000457537 863 ntBASIC9.04□□□□□ -0.96
LINC00643Q86TS7 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 MAL2-202ENST00000531508 892 ntTSL 3 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 COX5A-202ENST00000562233 441 ntTSL 3 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 COX5A-204ENST00000567270 579 ntTSL 3 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 AC010653.2-201ENST00000623505 997 ntBASIC9.04□□□□□ -0.96
LINC00643Q86TS7 RANGAP1-201ENST00000356244 3060 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC9.04□□□□□ -0.96
LINC00643Q86TS7 AP1G1-218ENST00000569748 4554 ntAPPRIS P3 TSL 2 BASIC9.04□□□□□ -0.96
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms