Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
CCNA1P78396 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCNA1P78396 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
CCNA1P78396 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CCNA1P78396 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCNA1P78396 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCNA1P78396 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCNA1P78396 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CCNA1P78396 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCNA1P78396 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CCNA1P78396 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.5■□□□□ 0.23
CCNA1P78396 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCNA1P78396 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCNA1P78396 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCNA1P78396 AC006372.4-201ENST00000624122 1543 ntBASIC16.5■□□□□ 0.23
CCNA1P78396 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC16.5■□□□□ 0.23
CCNA1P78396 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.5■□□□□ 0.23
CCNA1P78396 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCNA1P78396 IL9RP3-201ENST00000442856 1674 ntBASIC16.5■□□□□ 0.23
CCNA1P78396 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.5■□□□□ 0.23
CCNA1P78396 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.5■□□□□ 0.23
CCNA1P78396 LAP3P2-201ENST00000454686 1454 ntBASIC16.5■□□□□ 0.23
CCNA1P78396 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CCNA1P78396 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCNA1P78396 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC16.5■□□□□ 0.23
CCNA1P78396 SAT1-201ENST00000379251 801 ntTSL 2 BASIC16.5■□□□□ 0.23
CCNA1P78396 SAT1-202ENST00000379253 909 ntTSL 2 BASIC16.5■□□□□ 0.23
CCNA1P78396 SAT1-203ENST00000379254 868 ntTSL 3 BASIC16.5■□□□□ 0.23
CCNA1P78396 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCNA1P78396 AL357563.1-201ENST00000404728 395 ntBASIC16.5■□□□□ 0.23
CCNA1P78396 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC16.5■□□□□ 0.23
CCNA1P78396 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC16.5■□□□□ 0.23
CCNA1P78396 REEP5-205ENST00000504247 480 ntTSL 5 BASIC16.5■□□□□ 0.23
CCNA1P78396 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC16.5■□□□□ 0.23
CCNA1P78396 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CCNA1P78396 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCNA1P78396 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCNA1P78396 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC16.5■□□□□ 0.23
CCNA1P78396 AC005586.2-201ENST00000563946 837 ntBASIC16.5■□□□□ 0.23
CCNA1P78396 ELP5-212ENST00000574255 671 ntTSL 2 BASIC16.5■□□□□ 0.23
CCNA1P78396 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCNA1P78396 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC16.5■□□□□ 0.23
CCNA1P78396 AC005357.2-202ENST00000590507 1060 ntBASIC16.5■□□□□ 0.23
CCNA1P78396 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC16.5■□□□□ 0.23
CCNA1P78396 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC16.5■□□□□ 0.23
CCNA1P78396 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC16.5■□□□□ 0.23
CCNA1P78396 AC005041.3-201ENST00000606287 649 ntBASIC16.5■□□□□ 0.23
CCNA1P78396 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC16.5■□□□□ 0.23
CCNA1P78396 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC16.5■□□□□ 0.23
CCNA1P78396 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
CCNA1P78396 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
CCNA1P78396 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCNA1P78396 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCNA1P78396 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCNA1P78396 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.5■□□□□ 0.23
CCNA1P78396 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCNA1P78396 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CCNA1P78396 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCNA1P78396 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCNA1P78396 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC16.5■□□□□ 0.23
CCNA1P78396 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCNA1P78396 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCNA1P78396 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
CCNA1P78396 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCNA1P78396 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCNA1P78396 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC16.49■□□□□ 0.23
CCNA1P78396 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.49■□□□□ 0.23
CCNA1P78396 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCNA1P78396 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCNA1P78396 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC16.49■□□□□ 0.23
CCNA1P78396 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC16.49■□□□□ 0.23
CCNA1P78396 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CCNA1P78396 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCNA1P78396 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCNA1P78396 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCNA1P78396 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.49■□□□□ 0.23
CCNA1P78396 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCNA1P78396 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCNA1P78396 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC16.49■□□□□ 0.23
CCNA1P78396 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCNA1P78396 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCNA1P78396 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCNA1P78396 MIR1227-201ENST00000408484 88 ntBASIC16.49■□□□□ 0.23
CCNA1P78396 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC16.49■□□□□ 0.23
CCNA1P78396 OR8T1P-201ENST00000421347 918 ntBASIC16.49■□□□□ 0.23
CCNA1P78396 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCNA1P78396 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC16.49■□□□□ 0.23
CCNA1P78396 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC16.49■□□□□ 0.23
CCNA1P78396 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCNA1P78396 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC16.49■□□□□ 0.23
CCNA1P78396 C2orf69P1-201ENST00000563532 1093 ntBASIC16.49■□□□□ 0.23
CCNA1P78396 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCNA1P78396 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC16.49■□□□□ 0.23
CCNA1P78396 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.49■□□□□ 0.23
CCNA1P78396 AC007250.1-201ENST00000608934 338 ntBASIC16.49■□□□□ 0.23
CCNA1P78396 FO393412.1-201ENST00000619841 382 ntBASIC16.49■□□□□ 0.23
CCNA1P78396 AC138466.4-201ENST00000623965 852 ntBASIC16.49■□□□□ 0.23
CCNA1P78396 LINC00431-202ENST00000636375 159 ntBASIC16.49■□□□□ 0.23
CCNA1P78396 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCNA1P78396 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms