Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
CLRN1P58418 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
CLRN1P58418 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC13.15□□□□□ -0.3
CLRN1P58418 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 CD8B2-202ENST00000417670 633 ntBASIC13.15□□□□□ -0.3
CLRN1P58418 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
CLRN1P58418 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC13.15□□□□□ -0.3
CLRN1P58418 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC13.15□□□□□ -0.3
CLRN1P58418 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC13.15□□□□□ -0.3
CLRN1P58418 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.15□□□□□ -0.3
CLRN1P58418 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC13.15□□□□□ -0.3
CLRN1P58418 KRT90P-201ENST00000549264 1064 ntBASIC13.15□□□□□ -0.3
CLRN1P58418 AC005225.4-201ENST00000557330 545 ntBASIC13.15□□□□□ -0.3
CLRN1P58418 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC13.15□□□□□ -0.3
CLRN1P58418 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC13.15□□□□□ -0.3
CLRN1P58418 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC13.15□□□□□ -0.3
CLRN1P58418 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC13.15□□□□□ -0.3
CLRN1P58418 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC13.15□□□□□ -0.3
CLRN1P58418 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC13.15□□□□□ -0.3
CLRN1P58418 AC006453.4-201ENST00000636949 1252 ntBASIC13.15□□□□□ -0.3
CLRN1P58418 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC13.15□□□□□ -0.3
CLRN1P58418 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
CLRN1P58418 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC13.15□□□□□ -0.3
CLRN1P58418 TP73-201ENST00000346387 4854 ntTSL 5 BASIC13.15□□□□□ -0.3
CLRN1P58418 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.15□□□□□ -0.3
CLRN1P58418 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.15□□□□□ -0.3
CLRN1P58418 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC13.15□□□□□ -0.3
CLRN1P58418 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
CLRN1P58418 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
CLRN1P58418 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.31
CLRN1P58418 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.31
CLRN1P58418 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
CLRN1P58418 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
CLRN1P58418 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.14□□□□□ -0.31
CLRN1P58418 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
CLRN1P58418 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.14□□□□□ -0.31
CLRN1P58418 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.14□□□□□ -0.31
CLRN1P58418 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CLRN1P58418 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 AC027601.5-201ENST00000624065 2482 ntBASIC13.14□□□□□ -0.31
CLRN1P58418 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.14□□□□□ -0.31
CLRN1P58418 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.14□□□□□ -0.31
CLRN1P58418 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
CLRN1P58418 SNX21-203ENST00000372541 771 ntTSL 2 BASIC13.14□□□□□ -0.31
CLRN1P58418 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CLRN1P58418 PUDPP3-201ENST00000445368 636 ntBASIC13.14□□□□□ -0.31
CLRN1P58418 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC13.14□□□□□ -0.31
CLRN1P58418 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC13.14□□□□□ -0.31
CLRN1P58418 AHRR-211ENST00000515206 462 ntTSL 5 BASIC13.14□□□□□ -0.31
CLRN1P58418 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC13.14□□□□□ -0.31
CLRN1P58418 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC13.14□□□□□ -0.31
CLRN1P58418 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 AC078819.1-201ENST00000547454 765 ntBASIC13.14□□□□□ -0.31
CLRN1P58418 AC012085.1-201ENST00000548270 765 ntBASIC13.14□□□□□ -0.31
CLRN1P58418 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC13.14□□□□□ -0.31
CLRN1P58418 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC13.14□□□□□ -0.31
CLRN1P58418 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC13.14□□□□□ -0.31
CLRN1P58418 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
CLRN1P58418 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC13.14□□□□□ -0.31
CLRN1P58418 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CLRN1P58418 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC13.14□□□□□ -0.31
CLRN1P58418 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC13.14□□□□□ -0.31
CLRN1P58418 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC13.14□□□□□ -0.31
CLRN1P58418 AC012645.4-201ENST00000610691 1061 ntBASIC13.14□□□□□ -0.31
CLRN1P58418 BX088702.1-201ENST00000610784 235 ntBASIC13.14□□□□□ -0.31
CLRN1P58418 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CLRN1P58418 AC002472.3-201ENST00000640124 621 ntBASIC13.14□□□□□ -0.31
CLRN1P58418 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms