Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC000077.1-201ENST00000420012 953 ntBASIC16.72■□□□□ 0.27
SCN4AP35499 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC16.72■□□□□ 0.27
SCN4AP35499 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC16.72■□□□□ 0.27
SCN4AP35499 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC16.72■□□□□ 0.27
SCN4AP35499 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC16.72■□□□□ 0.27
SCN4AP35499 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC16.72■□□□□ 0.27
SCN4AP35499 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC16.72■□□□□ 0.27
SCN4AP35499 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
SCN4AP35499 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC16.72■□□□□ 0.27
SCN4AP35499 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC16.72■□□□□ 0.27
SCN4AP35499 AC009041.4-201ENST00000620075 638 ntBASIC16.72■□□□□ 0.27
SCN4AP35499 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.72■□□□□ 0.27
SCN4AP35499 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.72■□□□□ 0.27
SCN4AP35499 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SCN4AP35499 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
SCN4AP35499 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
SCN4AP35499 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SCN4AP35499 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SCN4AP35499 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC16.71■□□□□ 0.27
SCN4AP35499 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.71■□□□□ 0.27
SCN4AP35499 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SCN4AP35499 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SCN4AP35499 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SCN4AP35499 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SCN4AP35499 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC16.71■□□□□ 0.27
SCN4AP35499 SF1-209ENST00000433274 2317 ntTSL 2 BASIC16.71■□□□□ 0.27
SCN4AP35499 LINC02449-201ENST00000304751 795 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SCN4AP35499 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC16.71■□□□□ 0.27
SCN4AP35499 KRT8P6-201ENST00000399259 1207 ntBASIC16.71■□□□□ 0.27
SCN4AP35499 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SCN4AP35499 RN7SL672P-201ENST00000474091 317 ntBASIC16.71■□□□□ 0.27
SCN4AP35499 CD44-224ENST00000526669 870 ntTSL 5 BASIC16.71■□□□□ 0.27
SCN4AP35499 AP000920.1-201ENST00000531824 344 ntBASIC16.71■□□□□ 0.27
SCN4AP35499 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC16.71■□□□□ 0.27
SCN4AP35499 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC16.71■□□□□ 0.27
SCN4AP35499 CLPP-205ENST00000596605 646 ntTSL 2 BASIC16.71■□□□□ 0.27
SCN4AP35499 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SCN4AP35499 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SCN4AP35499 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.71■□□□□ 0.27
SCN4AP35499 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SCN4AP35499 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
SCN4AP35499 LINC02199-201ENST00000506655 2702 ntBASIC16.71■□□□□ 0.27
SCN4AP35499 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.71■□□□□ 0.27
SCN4AP35499 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
SCN4AP35499 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC16.7■□□□□ 0.26
SCN4AP35499 AC010086.2-201ENST00000428616 226 ntBASIC16.7■□□□□ 0.26
SCN4AP35499 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC16.7■□□□□ 0.26
SCN4AP35499 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC16.7■□□□□ 0.26
SCN4AP35499 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
SCN4AP35499 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
SCN4AP35499 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SCN4AP35499 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC16.7■□□□□ 0.26
SCN4AP35499 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SCN4AP35499 AC064850.1-201ENST00000413279 1398 ntBASIC16.7■□□□□ 0.26
SCN4AP35499 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 SALL4P6-201ENST00000429385 1691 ntBASIC16.7■□□□□ 0.26
SCN4AP35499 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.7■□□□□ 0.26
SCN4AP35499 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC16.7■□□□□ 0.26
SCN4AP35499 AC103592.1-201ENST00000394513 664 ntBASIC16.7■□□□□ 0.26
SCN4AP35499 AC015691.1-201ENST00000394793 535 ntTSL 3 BASIC16.7■□□□□ 0.26
SCN4AP35499 RPL18AP15-201ENST00000430258 517 ntBASIC16.7■□□□□ 0.26
SCN4AP35499 POLR2LP1-206ENST00000444785 187 ntBASIC16.7■□□□□ 0.26
SCN4AP35499 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC16.7■□□□□ 0.26
SCN4AP35499 AP001462.1-201ENST00000594089 452 ntBASIC16.7■□□□□ 0.26
SCN4AP35499 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC16.7■□□□□ 0.26
SCN4AP35499 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC16.7■□□□□ 0.26
SCN4AP35499 HCG18-241ENST00000602290 821 ntTSL 2 BASIC16.7■□□□□ 0.26
SCN4AP35499 NF1P11-201ENST00000621292 1282 ntBASIC16.7■□□□□ 0.26
SCN4AP35499 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC16.7■□□□□ 0.26
SCN4AP35499 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
SCN4AP35499 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SCN4AP35499 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.7■□□□□ 0.26
SCN4AP35499 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
SCN4AP35499 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SCN4AP35499 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.69■□□□□ 0.26
SCN4AP35499 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SCN4AP35499 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SCN4AP35499 ACE3P-201ENST00000423435 1973 ntBASIC16.69■□□□□ 0.26
SCN4AP35499 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
SCN4AP35499 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
SCN4AP35499 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SCN4AP35499 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SCN4AP35499 CASP2-203ENST00000392925 616 ntTSL 3 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms