Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 GK-202ENST00000378941 458 ntTSL 3 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 SOCS2P1-201ENST00000417727 557 ntBASIC11.26□□□□□ -0.61
HLA-DMBP28068 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 AC007969.1-201ENST00000433675 447 ntBASIC11.26□□□□□ -0.61
HLA-DMBP28068 AC114812.1-204ENST00000449669 728 ntBASIC11.26□□□□□ -0.61
HLA-DMBP28068 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 AC092552.1-201ENST00000547243 906 ntBASIC11.26□□□□□ -0.61
HLA-DMBP28068 POLE2-203ENST00000553805 496 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 AC005252.2-201ENST00000624630 1141 ntBASIC11.26□□□□□ -0.61
HLA-DMBP28068 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 BEND3P1-201ENST00000421591 1944 ntBASIC11.26□□□□□ -0.61
HLA-DMBP28068 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 AC090505.1-201ENST00000430515 1834 ntBASIC11.25□□□□□ -0.61
HLA-DMBP28068 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 AL442647.2-201ENST00000429864 857 ntBASIC11.25□□□□□ -0.61
HLA-DMBP28068 FO681548.1-201ENST00000455617 1132 ntBASIC11.25□□□□□ -0.61
HLA-DMBP28068 INE1-201ENST00000456273 945 ntBASIC11.25□□□□□ -0.61
HLA-DMBP28068 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 PUDP-206ENST00000540122 825 ntTSL 2 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 AL359183.1-201ENST00000623796 2132 ntBASIC11.25□□□□□ -0.61
HLA-DMBP28068 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 USE1-206ENST00000595101 1776 ntTSL 2 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 RN7SL832P-201ENST00000607781 1756 ntBASIC11.25□□□□□ -0.61
HLA-DMBP28068 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 AGER-206ENST00000375070 1463 ntTSL 5 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
HLA-DMBP28068 AC011498.7-201ENST00000624986 2027 ntBASIC11.25□□□□□ -0.61
HLA-DMBP28068 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
HLA-DMBP28068 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms