Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
HMGB1P09429 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGB1P09429 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB1P09429 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB1P09429 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB1P09429 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB1P09429 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB1P09429 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC17.31■□□□□ 0.36
HMGB1P09429 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
HMGB1P09429 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB1P09429 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC17.31■□□□□ 0.36
HMGB1P09429 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB1P09429 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.31■□□□□ 0.36
HMGB1P09429 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGB1P09429 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.31■□□□□ 0.36
HMGB1P09429 AC132192.2-201ENST00000596206 1147 ntBASIC17.31■□□□□ 0.36
HMGB1P09429 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
HMGB1P09429 AC104506.1-201ENST00000609247 429 ntBASIC17.31■□□□□ 0.36
HMGB1P09429 AL035252.4-201ENST00000624174 288 ntBASIC17.31■□□□□ 0.36
HMGB1P09429 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC17.31■□□□□ 0.36
HMGB1P09429 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB1P09429 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB1P09429 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB1P09429 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC17.31■□□□□ 0.36
HMGB1P09429 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB1P09429 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB1P09429 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGB1P09429 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
HMGB1P09429 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
HMGB1P09429 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGB1P09429 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGB1P09429 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
HMGB1P09429 AL928921.2-201ENST00000641325 2442 ntBASIC17.3■□□□□ 0.36
HMGB1P09429 HSPA8P5-201ENST00000456928 2069 ntBASIC17.3■□□□□ 0.36
HMGB1P09429 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
HMGB1P09429 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
HMGB1P09429 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
HMGB1P09429 TPO-206ENST00000382269 1155 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGB1P09429 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC17.3■□□□□ 0.36
HMGB1P09429 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
HMGB1P09429 MIR1909-201ENST00000411312 80 ntBASIC17.3■□□□□ 0.36
HMGB1P09429 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 IGHVIII-5-2-201ENST00000522505 261 ntBASIC17.3■□□□□ 0.36
HMGB1P09429 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGB1P09429 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.3■□□□□ 0.36
HMGB1P09429 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGB1P09429 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGB1P09429 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
HMGB1P09429 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
HMGB1P09429 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGB1P09429 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC17.3■□□□□ 0.36
HMGB1P09429 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGB1P09429 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
HMGB1P09429 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGB1P09429 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
HMGB1P09429 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB1P09429 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB1P09429 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB1P09429 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGB1P09429 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB1P09429 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB1P09429 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB1P09429 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGB1P09429 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB1P09429 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC17.29■□□□□ 0.36
HMGB1P09429 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB1P09429 AC079178.1-201ENST00000420915 656 ntBASIC17.29■□□□□ 0.36
HMGB1P09429 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC17.29■□□□□ 0.36
HMGB1P09429 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB1P09429 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC17.29■□□□□ 0.36
HMGB1P09429 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB1P09429 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC17.29■□□□□ 0.36
HMGB1P09429 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC17.29■□□□□ 0.36
HMGB1P09429 AC244157.2-201ENST00000616239 1006 ntBASIC17.29■□□□□ 0.36
HMGB1P09429 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB1P09429 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
HMGB1P09429 AC117489.1-201ENST00000625169 3217 ntBASIC17.29■□□□□ 0.36
HMGB1P09429 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGB1P09429 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB1P09429 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB1P09429 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
HMGB1P09429 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGB1P09429 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms