Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.27■□□□□ 0.04
AP4E1Q9UPM8 AC008825.2-201ENST00000603374 718 ntBASIC15.27■□□□□ 0.04
AP4E1Q9UPM8 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
AP4E1Q9UPM8 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 WARS-203ENST00000358655 2466 ntTSL 2 BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 AC011498.7-201ENST00000624986 2027 ntBASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP4E1Q9UPM8 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 SHC1P1-201ENST00000425230 1745 ntBASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 MIR326-201ENST00000362220 95 ntBASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 AC010141.1-201ENST00000411585 623 ntBASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 AC099336.1-201ENST00000417053 1171 ntBASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 PTPA-215ENST00000432124 567 ntTSL 4 BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 AC022210.1-201ENST00000449856 793 ntBASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 AC119751.2-201ENST00000504529 210 ntBASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 NCK2-206ENST00000522586 490 ntTSL 5 BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC15.26■□□□□ 0.03
AP4E1Q9UPM8 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 HLA-V-201ENST00000429037 534 ntBASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 CSF2RBP1-201ENST00000447905 391 ntBASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 AL035414.1-201ENST00000451327 857 ntBASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 SORD2P-201ENST00000558556 1069 ntBASIC15.25■□□□□ 0.03
AP4E1Q9UPM8 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms