Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AC064850.1-201ENST00000413279 1398 ntBASIC23.36■■□□□ 1.33
IFT140Q96RY7 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 HNRNPA3P12-201ENST00000437410 1063 ntBASIC23.36■■□□□ 1.33
IFT140Q96RY7 YY1P2-201ENST00000438766 948 ntBASIC23.36■■□□□ 1.33
IFT140Q96RY7 CDKN2A-AS1-201ENST00000441769 823 ntBASIC23.36■■□□□ 1.33
IFT140Q96RY7 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 AC008620.2-201ENST00000510294 1569 ntBASIC23.36■■□□□ 1.33
IFT140Q96RY7 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
IFT140Q96RY7 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
IFT140Q96RY7 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
IFT140Q96RY7 CCND3P2-201ENST00000579393 537 ntBASIC23.36■■□□□ 1.33
IFT140Q96RY7 RN7SL478P-201ENST00000584358 298 ntBASIC23.36■■□□□ 1.33
IFT140Q96RY7 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
IFT140Q96RY7 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC23.36■■□□□ 1.33
IFT140Q96RY7 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
IFT140Q96RY7 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
IFT140Q96RY7 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
IFT140Q96RY7 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
IFT140Q96RY7 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
IFT140Q96RY7 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
IFT140Q96RY7 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
IFT140Q96RY7 RPL4P6-201ENST00000438116 1304 ntBASIC23.36■■□□□ 1.33
IFT140Q96RY7 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
IFT140Q96RY7 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 MPV17-209ENST00000405983 859 ntTSL 5 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 AL954722.1-201ENST00000431238 259 ntBASIC23.36■■□□□ 1.33
IFT140Q96RY7 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
IFT140Q96RY7 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 EMP3-204ENST00000596315 761 ntTSL 2 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 AC123912.6-201ENST00000612657 315 ntBASIC23.36■■□□□ 1.33
IFT140Q96RY7 AC026120.2-201ENST00000617239 309 ntBASIC23.36■■□□□ 1.33
IFT140Q96RY7 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC23.36■■□□□ 1.33
IFT140Q96RY7 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
IFT140Q96RY7 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
IFT140Q96RY7 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC23.35■■□□□ 1.33
IFT140Q96RY7 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC23.35■■□□□ 1.33
IFT140Q96RY7 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC23.35■■□□□ 1.33
IFT140Q96RY7 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
IFT140Q96RY7 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
IFT140Q96RY7 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC23.35■■□□□ 1.33
IFT140Q96RY7 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
IFT140Q96RY7 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC23.35■■□□□ 1.33
IFT140Q96RY7 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
IFT140Q96RY7 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
IFT140Q96RY7 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
IFT140Q96RY7 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC23.35■■□□□ 1.33
IFT140Q96RY7 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC23.35■■□□□ 1.33
IFT140Q96RY7 OR2W3-201ENST00000360358 945 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
IFT140Q96RY7 CFL1P6-201ENST00000400899 494 ntBASIC23.35■■□□□ 1.33
IFT140Q96RY7 RPSAP6-201ENST00000417882 882 ntBASIC23.35■■□□□ 1.33
IFT140Q96RY7 OR4C14P-201ENST00000440929 923 ntBASIC23.35■■□□□ 1.33
IFT140Q96RY7 Z82244.2-201ENST00000632196 448 ntBASIC23.35■■□□□ 1.33
IFT140Q96RY7 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
IFT140Q96RY7 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC23.35■■□□□ 1.33
IFT140Q96RY7 LINC02199-201ENST00000506655 2702 ntBASIC23.34■■□□□ 1.33
IFT140Q96RY7 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
IFT140Q96RY7 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
IFT140Q96RY7 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
IFT140Q96RY7 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC23.34■■□□□ 1.33
IFT140Q96RY7 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
IFT140Q96RY7 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
IFT140Q96RY7 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC23.34■■□□□ 1.33
IFT140Q96RY7 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
IFT140Q96RY7 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
IFT140Q96RY7 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC23.34■■□□□ 1.33
IFT140Q96RY7 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
IFT140Q96RY7 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC23.34■■□□□ 1.33
IFT140Q96RY7 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
IFT140Q96RY7 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
IFT140Q96RY7 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC23.34■■□□□ 1.33
IFT140Q96RY7 GHRL-206ENST00000430179 856 ntAPPRIS ALT1 TSL 1 (best) BASIC23.34■■□□□ 1.33
IFT140Q96RY7 AC233724.9-201ENST00000511694 407 ntBASIC23.34■■□□□ 1.33
IFT140Q96RY7 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC23.34■■□□□ 1.33
IFT140Q96RY7 AC010202.1-201ENST00000551181 405 ntBASIC23.34■■□□□ 1.33
IFT140Q96RY7 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC23.34■■□□□ 1.33
IFT140Q96RY7 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC23.34■■□□□ 1.33
IFT140Q96RY7 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC23.34■■□□□ 1.33
IFT140Q96RY7 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
IFT140Q96RY7 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
IFT140Q96RY7 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
IFT140Q96RY7 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
IFT140Q96RY7 OSCP1-201ENST00000235532 1455 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
IFT140Q96RY7 OSCP1-203ENST00000356637 1463 ntTSL 5 BASIC23.34■■□□□ 1.33
IFT140Q96RY7 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
IFT140Q96RY7 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
IFT140Q96RY7 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
IFT140Q96RY7 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
IFT140Q96RY7 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
IFT140Q96RY7 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms