Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC23.78■■□□□ 1.4
CUX1P39880 TYMSP2-201ENST00000589501 424 ntBASIC23.78■■□□□ 1.4
CUX1P39880 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC23.78■■□□□ 1.4
CUX1P39880 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC23.78■■□□□ 1.4
CUX1P39880 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC23.78■■□□□ 1.4
CUX1P39880 AC010531.8-201ENST00000623341 685 ntBASIC23.78■■□□□ 1.4
CUX1P39880 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CUX1P39880 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CUX1P39880 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CUX1P39880 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC23.77■■□□□ 1.4
CUX1P39880 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC23.77■■□□□ 1.4
CUX1P39880 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC23.77■■□□□ 1.4
CUX1P39880 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CUX1P39880 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CUX1P39880 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CUX1P39880 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC23.77■■□□□ 1.4
CUX1P39880 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
CUX1P39880 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CUX1P39880 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CUX1P39880 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
CUX1P39880 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CUX1P39880 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
CUX1P39880 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CUX1P39880 AC004522.1-201ENST00000419978 654 ntBASIC23.77■■□□□ 1.4
CUX1P39880 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC23.77■■□□□ 1.4
CUX1P39880 BCRP4-201ENST00000506079 804 ntBASIC23.77■■□□□ 1.4
CUX1P39880 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC23.77■■□□□ 1.4
CUX1P39880 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC23.77■■□□□ 1.4
CUX1P39880 ANKRD26P1-203ENST00000569528 966 ntBASIC23.77■■□□□ 1.4
CUX1P39880 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
CUX1P39880 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
CUX1P39880 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC23.77■■□□□ 1.4
CUX1P39880 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC23.77■■□□□ 1.4
CUX1P39880 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC23.77■■□□□ 1.4
CUX1P39880 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CUX1P39880 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
CUX1P39880 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC23.77■■□□□ 1.4
CUX1P39880 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.39
CUX1P39880 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CUX1P39880 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC23.76■■□□□ 1.39
CUX1P39880 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
CUX1P39880 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
CUX1P39880 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CUX1P39880 ABCD1P4-201ENST00000399687 604 ntBASIC23.76■■□□□ 1.39
CUX1P39880 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
CUX1P39880 NRADDP-201ENST00000437305 691 ntBASIC23.76■■□□□ 1.39
CUX1P39880 AL591424.3-201ENST00000614278 872 ntBASIC23.76■■□□□ 1.39
CUX1P39880 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC23.76■■□□□ 1.39
CUX1P39880 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CUX1P39880 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CUX1P39880 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC23.76■■□□□ 1.39
CUX1P39880 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CUX1P39880 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CUX1P39880 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC23.76■■□□□ 1.39
CUX1P39880 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CUX1P39880 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
CUX1P39880 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
CUX1P39880 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CUX1P39880 RPL13AP3-202ENST00000494676 1473 ntBASIC23.76■■□□□ 1.39
CUX1P39880 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CUX1P39880 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CUX1P39880 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CUX1P39880 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC23.75■■□□□ 1.39
CUX1P39880 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
CUX1P39880 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CUX1P39880 BRI3P1-201ENST00000440440 378 ntBASIC23.75■■□□□ 1.39
CUX1P39880 AC113347.2-201ENST00000512350 279 ntBASIC23.75■■□□□ 1.39
CUX1P39880 AC100858.1-201ENST00000514059 1228 ntBASIC23.75■■□□□ 1.39
CUX1P39880 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC23.75■■□□□ 1.39
CUX1P39880 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
CUX1P39880 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC23.75■■□□□ 1.39
CUX1P39880 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC23.75■■□□□ 1.39
CUX1P39880 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC23.75■■□□□ 1.39
CUX1P39880 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CUX1P39880 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
CUX1P39880 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CUX1P39880 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC23.75■■□□□ 1.39
CUX1P39880 GSN-209ENST00000449733 2702 ntTSL 2 BASIC23.75■■□□□ 1.39
CUX1P39880 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CUX1P39880 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC23.75■■□□□ 1.39
CUX1P39880 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
CUX1P39880 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CUX1P39880 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
CUX1P39880 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC23.75■■□□□ 1.39
CUX1P39880 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC23.75■■□□□ 1.39
CUX1P39880 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
CUX1P39880 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC23.74■■□□□ 1.39
CUX1P39880 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC23.74■■□□□ 1.39
CUX1P39880 AC025594.1-201ENST00000469533 543 ntBASIC23.74■■□□□ 1.39
CUX1P39880 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC23.74■■□□□ 1.39
CUX1P39880 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CUX1P39880 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC23.74■■□□□ 1.39
CUX1P39880 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CUX1P39880 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CUX1P39880 AC022532.1-201ENST00000624563 1728 ntBASIC23.74■■□□□ 1.39
CUX1P39880 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CUX1P39880 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
CUX1P39880 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC23.74■■□□□ 1.39
CUX1P39880 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CUX1P39880 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms