Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC43.67■■■■■ 4.58
SHROOM4Q9ULL8 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC43.67■■■■■ 4.58
SHROOM4Q9ULL8 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC43.67■■■■■ 4.58
SHROOM4Q9ULL8 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC43.66■■■■■ 4.58
SHROOM4Q9ULL8 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC43.66■■■■■ 4.58
SHROOM4Q9ULL8 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC43.66■■■■■ 4.58
SHROOM4Q9ULL8 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC43.66■■■■■ 4.58
SHROOM4Q9ULL8 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC43.66■■■■■ 4.58
SHROOM4Q9ULL8 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC43.66■■■■■ 4.58
SHROOM4Q9ULL8 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC43.65■■■■■ 4.58
SHROOM4Q9ULL8 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC43.65■■■■■ 4.58
SHROOM4Q9ULL8 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC43.65■■■■■ 4.58
SHROOM4Q9ULL8 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC43.64■■■■■ 4.58
SHROOM4Q9ULL8 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC43.64■■■■■ 4.58
SHROOM4Q9ULL8 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC43.64■■■■■ 4.58
SHROOM4Q9ULL8 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC43.64■■■■■ 4.58
SHROOM4Q9ULL8 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC43.64■■■■■ 4.58
SHROOM4Q9ULL8 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC43.64■■■■■ 4.58
SHROOM4Q9ULL8 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC43.64■■■■■ 4.58
SHROOM4Q9ULL8 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC43.64■■■■■ 4.58
SHROOM4Q9ULL8 DUX4L2-201ENST00000561772 1275 ntBASIC43.64■■■■■ 4.58
SHROOM4Q9ULL8 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC43.64■■■■■ 4.58
SHROOM4Q9ULL8 DUX4L6-201ENST00000626483 1275 ntBASIC43.64■■■■■ 4.58
SHROOM4Q9ULL8 DUX4L1-201ENST00000627662 1275 ntBASIC43.64■■■■■ 4.58
SHROOM4Q9ULL8 DUX4L8-201ENST00000629013 1275 ntBASIC43.64■■■■■ 4.58
SHROOM4Q9ULL8 DUX4L3-201ENST00000630187 1275 ntBASIC43.64■■■■■ 4.58
SHROOM4Q9ULL8 DUX4L7-201ENST00000630678 1275 ntBASIC43.64■■■■■ 4.58
SHROOM4Q9ULL8 DUX4L5-201ENST00000630834 1275 ntBASIC43.64■■■■■ 4.58
SHROOM4Q9ULL8 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC43.63■■■■■ 4.57
SHROOM4Q9ULL8 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC43.63■■■■■ 4.57
SHROOM4Q9ULL8 AC005703.6-201ENST00000623265 1329 ntBASIC43.63■■■■■ 4.57
SHROOM4Q9ULL8 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC43.63■■■■■ 4.57
SHROOM4Q9ULL8 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC43.63■■■■■ 4.57
SHROOM4Q9ULL8 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC43.62■■■■■ 4.57
SHROOM4Q9ULL8 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC43.62■■■■■ 4.57
SHROOM4Q9ULL8 MIR6089-201ENST00000616698 64 ntBASIC43.62■■■■■ 4.57
SHROOM4Q9ULL8 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC43.62■■■■■ 4.57
SHROOM4Q9ULL8 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC43.61■■■■■ 4.57
SHROOM4Q9ULL8 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC43.61■■■■■ 4.57
SHROOM4Q9ULL8 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC43.61■■■■■ 4.57
SHROOM4Q9ULL8 AC008764.7-201ENST00000593779 1081 ntBASIC43.61■■■■■ 4.57
SHROOM4Q9ULL8 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC43.6■■■■■ 4.57
SHROOM4Q9ULL8 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC43.6■■■■■ 4.57
SHROOM4Q9ULL8 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC43.6■■■■■ 4.57
SHROOM4Q9ULL8 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC43.6■■■■■ 4.57
SHROOM4Q9ULL8 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC43.6■■■■■ 4.57
SHROOM4Q9ULL8 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC43.6■■■■■ 4.57
SHROOM4Q9ULL8 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC43.6■■■■■ 4.57
SHROOM4Q9ULL8 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC43.6■■■■■ 4.57
SHROOM4Q9ULL8 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC43.59■■■■■ 4.57
SHROOM4Q9ULL8 AC027612.3-201ENST00000413684 1047 ntBASIC43.59■■■■■ 4.57
SHROOM4Q9ULL8 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC43.59■■■■■ 4.57
SHROOM4Q9ULL8 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC43.59■■■■■ 4.57
SHROOM4Q9ULL8 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC43.59■■■■■ 4.57
SHROOM4Q9ULL8 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC43.59■■■■■ 4.57
SHROOM4Q9ULL8 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC43.59■■■■■ 4.57
SHROOM4Q9ULL8 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC43.59■■■■■ 4.57
SHROOM4Q9ULL8 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC43.59■■■■■ 4.57
SHROOM4Q9ULL8 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC43.59■■■■■ 4.57
SHROOM4Q9ULL8 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC43.58■■■■■ 4.57
SHROOM4Q9ULL8 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC43.58■■■■■ 4.57
SHROOM4Q9ULL8 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC43.58■■■■■ 4.57
SHROOM4Q9ULL8 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC43.58■■■■■ 4.57
SHROOM4Q9ULL8 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC43.58■■■■■ 4.57
SHROOM4Q9ULL8 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC43.58■■■■■ 4.57
SHROOM4Q9ULL8 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC43.57■■■■■ 4.57
SHROOM4Q9ULL8 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC43.57■■■■■ 4.57
SHROOM4Q9ULL8 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC43.57■■■■■ 4.56
SHROOM4Q9ULL8 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC43.57■■■■■ 4.56
SHROOM4Q9ULL8 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC43.56■■■■■ 4.56
SHROOM4Q9ULL8 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC43.56■■■■■ 4.56
SHROOM4Q9ULL8 DLX3-202ENST00000512495 834 ntTSL 2 BASIC43.56■■■■■ 4.56
SHROOM4Q9ULL8 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC43.56■■■■■ 4.56
SHROOM4Q9ULL8 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC43.56■■■■■ 4.56
SHROOM4Q9ULL8 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC43.55■■■■■ 4.56
SHROOM4Q9ULL8 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC43.55■■■■■ 4.56
SHROOM4Q9ULL8 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC43.55■■■■■ 4.56
SHROOM4Q9ULL8 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC43.55■■■■■ 4.56
SHROOM4Q9ULL8 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC43.55■■■■■ 4.56
SHROOM4Q9ULL8 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC43.54■■■■■ 4.56
SHROOM4Q9ULL8 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC43.54■■■■■ 4.56
SHROOM4Q9ULL8 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC43.54■■■■■ 4.56
SHROOM4Q9ULL8 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC43.53■■■■■ 4.56
SHROOM4Q9ULL8 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC43.52■■■■■ 4.56
SHROOM4Q9ULL8 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC43.52■■■■■ 4.56
SHROOM4Q9ULL8 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC43.52■■■■■ 4.56
SHROOM4Q9ULL8 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC43.51■■■■■ 4.56
SHROOM4Q9ULL8 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC43.51■■■■■ 4.56
SHROOM4Q9ULL8 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC43.51■■■■■ 4.56
SHROOM4Q9ULL8 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC43.51■■■■■ 4.56
SHROOM4Q9ULL8 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC43.51■■■■■ 4.56
SHROOM4Q9ULL8 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC43.51■■■■■ 4.56
SHROOM4Q9ULL8 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC43.51■■■■■ 4.56
SHROOM4Q9ULL8 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC43.51■■■■■ 4.55
SHROOM4Q9ULL8 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC43.5■■■■■ 4.55
SHROOM4Q9ULL8 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC43.5■■■■■ 4.55
SHROOM4Q9ULL8 BX842568.3-201ENST00000418104 571 ntBASIC43.5■■■■■ 4.55
SHROOM4Q9ULL8 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC43.5■■■■■ 4.55
SHROOM4Q9ULL8 VPS53-216ENST00000574029 585 ntTSL 4 BASIC43.5■■■■■ 4.55
SHROOM4Q9ULL8 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC43.5■■■■■ 4.55
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms