Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC24.56■■□□□ 1.52
NKX2-4Q9H2Z4 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
NKX2-4Q9H2Z4 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
NKX2-4Q9H2Z4 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC24.55■■□□□ 1.52
NKX2-4Q9H2Z4 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
NKX2-4Q9H2Z4 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
NKX2-4Q9H2Z4 AICDA-202ENST00000537228 667 ntTSL 5 BASIC24.55■■□□□ 1.52
NKX2-4Q9H2Z4 pRNA.6-201ENST00000610482 90 ntBASIC24.55■■□□□ 1.52
NKX2-4Q9H2Z4 pRNA.5-201ENST00000612139 90 ntBASIC24.55■■□□□ 1.52
NKX2-4Q9H2Z4 pRNA.11-201ENST00000618423 90 ntBASIC24.55■■□□□ 1.52
NKX2-4Q9H2Z4 pRNA.13-201ENST00000619112 90 ntBASIC24.55■■□□□ 1.52
NKX2-4Q9H2Z4 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
NKX2-4Q9H2Z4 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
NKX2-4Q9H2Z4 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
NKX2-4Q9H2Z4 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
NKX2-4Q9H2Z4 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
NKX2-4Q9H2Z4 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
NKX2-4Q9H2Z4 KRT18P14-201ENST00000534205 1250 ntBASIC24.54■■□□□ 1.52
NKX2-4Q9H2Z4 TK2-208ENST00000545043 1120 ntTSL 2 BASIC24.54■■□□□ 1.52
NKX2-4Q9H2Z4 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC24.54■■□□□ 1.52
NKX2-4Q9H2Z4 NKILA-201ENST00000613231 537 ntTSL 4 BASIC24.54■■□□□ 1.52
NKX2-4Q9H2Z4 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
NKX2-4Q9H2Z4 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
NKX2-4Q9H2Z4 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC24.53■■□□□ 1.52
NKX2-4Q9H2Z4 ESRRAP2-201ENST00000418437 1549 ntBASIC24.53■■□□□ 1.52
NKX2-4Q9H2Z4 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC24.53■■□□□ 1.52
NKX2-4Q9H2Z4 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC24.53■■□□□ 1.52
NKX2-4Q9H2Z4 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC24.53■■□□□ 1.52
NKX2-4Q9H2Z4 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC24.53■■□□□ 1.52
NKX2-4Q9H2Z4 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
NKX2-4Q9H2Z4 MIR572-201ENST00000384983 95 ntBASIC24.52■■□□□ 1.52
NKX2-4Q9H2Z4 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
NKX2-4Q9H2Z4 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
NKX2-4Q9H2Z4 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
NKX2-4Q9H2Z4 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
NKX2-4Q9H2Z4 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC24.51■■□□□ 1.51
NKX2-4Q9H2Z4 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC24.51■■□□□ 1.51
NKX2-4Q9H2Z4 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
NKX2-4Q9H2Z4 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC24.51■■□□□ 1.51
NKX2-4Q9H2Z4 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC24.51■■□□□ 1.51
NKX2-4Q9H2Z4 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
NKX2-4Q9H2Z4 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
NKX2-4Q9H2Z4 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
NKX2-4Q9H2Z4 ERN1-208ENST00000606895 2068 ntBASIC24.5■■□□□ 1.51
NKX2-4Q9H2Z4 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC24.5■■□□□ 1.51
NKX2-4Q9H2Z4 VGF-203ENST00000611537 1622 ntTSL 5 BASIC24.5■■□□□ 1.51
NKX2-4Q9H2Z4 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
NKX2-4Q9H2Z4 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
NKX2-4Q9H2Z4 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
NKX2-4Q9H2Z4 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC24.5■■□□□ 1.51
NKX2-4Q9H2Z4 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC24.5■■□□□ 1.51
NKX2-4Q9H2Z4 IGHV3-19-201ENST00000521488 291 ntBASIC24.5■■□□□ 1.51
NKX2-4Q9H2Z4 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC24.5■■□□□ 1.51
NKX2-4Q9H2Z4 AL354811.1-201ENST00000610286 706 ntBASIC24.5■■□□□ 1.51
NKX2-4Q9H2Z4 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC24.5■■□□□ 1.51
NKX2-4Q9H2Z4 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC24.5■■□□□ 1.51
NKX2-4Q9H2Z4 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
NKX2-4Q9H2Z4 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
NKX2-4Q9H2Z4 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC24.49■■□□□ 1.51
NKX2-4Q9H2Z4 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC24.49■■□□□ 1.51
NKX2-4Q9H2Z4 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC24.49■■□□□ 1.51
NKX2-4Q9H2Z4 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC24.49■■□□□ 1.51
NKX2-4Q9H2Z4 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
NKX2-4Q9H2Z4 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
NKX2-4Q9H2Z4 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
NKX2-4Q9H2Z4 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
NKX2-4Q9H2Z4 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC24.48■■□□□ 1.51
NKX2-4Q9H2Z4 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC24.48■■□□□ 1.51
NKX2-4Q9H2Z4 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
NKX2-4Q9H2Z4 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
NKX2-4Q9H2Z4 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC24.48■■□□□ 1.51
NKX2-4Q9H2Z4 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC24.48■■□□□ 1.51
NKX2-4Q9H2Z4 GXYLT1P5-201ENST00000614548 1189 ntBASIC24.48■■□□□ 1.51
NKX2-4Q9H2Z4 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC24.48■■□□□ 1.51
NKX2-4Q9H2Z4 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
NKX2-4Q9H2Z4 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
NKX2-4Q9H2Z4 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
NKX2-4Q9H2Z4 ABHD17AP1-201ENST00000358206 933 ntBASIC24.47■■□□□ 1.51
NKX2-4Q9H2Z4 TERF1P2-201ENST00000583350 1212 ntBASIC24.47■■□□□ 1.51
NKX2-4Q9H2Z4 AC080038.1-201ENST00000611274 1154 ntBASIC24.47■■□□□ 1.51
NKX2-4Q9H2Z4 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC24.47■■□□□ 1.51
NKX2-4Q9H2Z4 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC24.47■■□□□ 1.51
NKX2-4Q9H2Z4 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC24.46■■□□□ 1.51
NKX2-4Q9H2Z4 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
NKX2-4Q9H2Z4 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
NKX2-4Q9H2Z4 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
NKX2-4Q9H2Z4 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC24.46■■□□□ 1.51
NKX2-4Q9H2Z4 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.51
NKX2-4Q9H2Z4 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC24.45■■□□□ 1.5
NKX2-4Q9H2Z4 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC24.45■■□□□ 1.5
NKX2-4Q9H2Z4 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC24.45■■□□□ 1.5
NKX2-4Q9H2Z4 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC24.45■■□□□ 1.5
NKX2-4Q9H2Z4 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC24.45■■□□□ 1.5
NKX2-4Q9H2Z4 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
NKX2-4Q9H2Z4 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
NKX2-4Q9H2Z4 GTSE1-AS1-202ENST00000623117 1518 ntBASIC24.45■■□□□ 1.5
NKX2-4Q9H2Z4 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC24.45■■□□□ 1.5
NKX2-4Q9H2Z4 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
NKX2-4Q9H2Z4 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC24.45■■□□□ 1.5
NKX2-4Q9H2Z4 LINC02228-203ENST00000641970 1355 ntBASIC24.44■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms