Protein–RNA interactions for Protein: Q8NET4

RTL9, Retrotransposon Gag-like protein 9, humanhuman

Predictions only

Length 1,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL9Q8NET4 SYT6-210ENST00000641643 1587 ntBASIC28.31■■■□□ 2.12
RTL9Q8NET4 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
RTL9Q8NET4 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
RTL9Q8NET4 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
RTL9Q8NET4 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC28.31■■■□□ 2.12
RTL9Q8NET4 SERBP1P1-201ENST00000396021 1160 ntBASIC28.31■■■□□ 2.12
RTL9Q8NET4 AP001330.3-201ENST00000520123 633 ntBASIC28.31■■■□□ 2.12
RTL9Q8NET4 AL138724.1-201ENST00000606771 1088 ntBASIC28.31■■■□□ 2.12
RTL9Q8NET4 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC28.31■■■□□ 2.12
RTL9Q8NET4 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC28.31■■■□□ 2.12
RTL9Q8NET4 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC28.31■■■□□ 2.12
RTL9Q8NET4 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
RTL9Q8NET4 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC28.3■■■□□ 2.12
RTL9Q8NET4 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
RTL9Q8NET4 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC28.3■■■□□ 2.12
RTL9Q8NET4 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
RTL9Q8NET4 MIR939-201ENST00000401314 82 ntBASIC28.3■■■□□ 2.12
RTL9Q8NET4 AC099791.2-201ENST00000605725 427 ntBASIC28.3■■■□□ 2.12
RTL9Q8NET4 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC28.3■■■□□ 2.12
RTL9Q8NET4 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
RTL9Q8NET4 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
RTL9Q8NET4 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC28.29■■■□□ 2.12
RTL9Q8NET4 AC011298.3-201ENST00000615796 283 ntBASIC28.29■■■□□ 2.12
RTL9Q8NET4 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RTL9Q8NET4 AC022211.4-201ENST00000625094 2161 ntBASIC28.29■■■□□ 2.12
RTL9Q8NET4 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
RTL9Q8NET4 PTCHD3P2-201ENST00000424937 1205 ntBASIC28.28■■■□□ 2.12
RTL9Q8NET4 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
RTL9Q8NET4 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC28.28■■■□□ 2.12
RTL9Q8NET4 CREM-210ENST00000374721 2020 ntTSL 5 BASIC28.28■■■□□ 2.12
RTL9Q8NET4 AP003733.4-201ENST00000623785 1697 ntBASIC28.28■■■□□ 2.12
RTL9Q8NET4 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
RTL9Q8NET4 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RTL9Q8NET4 HYI-206ENST00000372434 1025 ntTSL 5 BASIC28.27■■■□□ 2.12
RTL9Q8NET4 AC105265.2-201ENST00000467189 838 ntBASIC28.27■■■□□ 2.12
RTL9Q8NET4 MIR4767-201ENST00000582827 78 ntBASIC28.27■■■□□ 2.12
RTL9Q8NET4 AL136967.2-201ENST00000623968 743 ntBASIC28.27■■■□□ 2.12
RTL9Q8NET4 AC241377.3-202ENST00000626088 1088 ntBASIC28.27■■■□□ 2.12
RTL9Q8NET4 AC241585.3-202ENST00000628937 1088 ntBASIC28.27■■■□□ 2.12
RTL9Q8NET4 AC245100.8-202ENST00000629247 1058 ntBASIC28.27■■■□□ 2.12
RTL9Q8NET4 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
RTL9Q8NET4 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RTL9Q8NET4 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
RTL9Q8NET4 PTMA-205ENST00000410064 814 ntTSL 2 BASIC28.26■■■□□ 2.12
RTL9Q8NET4 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC28.26■■■□□ 2.12
RTL9Q8NET4 AF213884.3-201ENST00000563833 479 ntBASIC28.26■■■□□ 2.12
RTL9Q8NET4 GRAMD4P4-201ENST00000613563 1115 ntBASIC28.26■■■□□ 2.12
RTL9Q8NET4 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
RTL9Q8NET4 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
RTL9Q8NET4 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
RTL9Q8NET4 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
RTL9Q8NET4 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
RTL9Q8NET4 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC28.26■■■□□ 2.11
RTL9Q8NET4 ALDH1A3-203ENST00000557963 1670 ntBASIC28.25■■■□□ 2.11
RTL9Q8NET4 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC28.25■■■□□ 2.11
RTL9Q8NET4 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
RTL9Q8NET4 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC28.25■■■□□ 2.11
RTL9Q8NET4 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC28.25■■■□□ 2.11
RTL9Q8NET4 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
RTL9Q8NET4 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC28.25■■■□□ 2.11
RTL9Q8NET4 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC28.24■■■□□ 2.11
RTL9Q8NET4 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
RTL9Q8NET4 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC28.24■■■□□ 2.11
RTL9Q8NET4 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
RTL9Q8NET4 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RTL9Q8NET4 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RTL9Q8NET4 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC28.23■■■□□ 2.11
RTL9Q8NET4 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC28.23■■■□□ 2.11
RTL9Q8NET4 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RTL9Q8NET4 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC28.23■■■□□ 2.11
RTL9Q8NET4 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC28.23■■■□□ 2.11
RTL9Q8NET4 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC28.23■■■□□ 2.11
RTL9Q8NET4 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
RTL9Q8NET4 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC28.22■■■□□ 2.11
RTL9Q8NET4 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
RTL9Q8NET4 USF2-207ENST00000595068 1612 ntTSL 5 BASIC28.22■■■□□ 2.11
RTL9Q8NET4 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
RTL9Q8NET4 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
RTL9Q8NET4 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
RTL9Q8NET4 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC28.22■■■□□ 2.11
RTL9Q8NET4 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC28.22■■■□□ 2.11
RTL9Q8NET4 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
RTL9Q8NET4 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
RTL9Q8NET4 MIR5787-201ENST00000611784 55 ntBASIC28.22■■■□□ 2.11
RTL9Q8NET4 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC28.22■■■□□ 2.11
RTL9Q8NET4 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
RTL9Q8NET4 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
RTL9Q8NET4 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RTL9Q8NET4 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RTL9Q8NET4 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
RTL9Q8NET4 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
RTL9Q8NET4 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RTL9Q8NET4 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RTL9Q8NET4 AC091305.1-201ENST00000479476 895 ntBASIC28.21■■■□□ 2.11
RTL9Q8NET4 EI24-204ENST00000527235 1625 ntTSL 5 BASIC28.21■■■□□ 2.11
RTL9Q8NET4 VGF-203ENST00000611537 1622 ntTSL 5 BASIC28.21■■■□□ 2.11
RTL9Q8NET4 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC28.21■■■□□ 2.11
RTL9Q8NET4 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RTL9Q8NET4 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
RTL9Q8NET4 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 302.2 ms