Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CCDC88AQ3V6T2 AC131274.2-201ENST00000580697 1507 ntBASIC28.27■■■□□ 2.12
CCDC88AQ3V6T2 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CCDC88AQ3V6T2 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
CCDC88AQ3V6T2 AC136469.2-201ENST00000623944 1028 ntBASIC28.27■■■□□ 2.12
CCDC88AQ3V6T2 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
CCDC88AQ3V6T2 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
CCDC88AQ3V6T2 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC28.27■■■□□ 2.12
CCDC88AQ3V6T2 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC28.27■■■□□ 2.12
CCDC88AQ3V6T2 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
CCDC88AQ3V6T2 ME3-201ENST00000323418 1068 ntTSL 5 BASIC28.26■■■□□ 2.11
CCDC88AQ3V6T2 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC28.26■■■□□ 2.11
CCDC88AQ3V6T2 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC28.26■■■□□ 2.11
CCDC88AQ3V6T2 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
CCDC88AQ3V6T2 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC28.26■■■□□ 2.11
CCDC88AQ3V6T2 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC28.25■■■□□ 2.11
CCDC88AQ3V6T2 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC28.25■■■□□ 2.11
CCDC88AQ3V6T2 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CCDC88AQ3V6T2 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC28.25■■■□□ 2.11
CCDC88AQ3V6T2 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC28.25■■■□□ 2.11
CCDC88AQ3V6T2 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC28.25■■■□□ 2.11
CCDC88AQ3V6T2 AC233992.3-201ENST00000607491 485 ntBASIC28.25■■■□□ 2.11
CCDC88AQ3V6T2 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC28.25■■■□□ 2.11
CCDC88AQ3V6T2 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
CCDC88AQ3V6T2 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CCDC88AQ3V6T2 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC28.25■■■□□ 2.11
CCDC88AQ3V6T2 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC28.25■■■□□ 2.11
CCDC88AQ3V6T2 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC28.25■■■□□ 2.11
CCDC88AQ3V6T2 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
CCDC88AQ3V6T2 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CCDC88AQ3V6T2 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
CCDC88AQ3V6T2 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
CCDC88AQ3V6T2 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
CCDC88AQ3V6T2 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC28.23■■■□□ 2.11
CCDC88AQ3V6T2 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
CCDC88AQ3V6T2 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
CCDC88AQ3V6T2 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
CCDC88AQ3V6T2 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
CCDC88AQ3V6T2 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC28.23■■■□□ 2.11
CCDC88AQ3V6T2 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
CCDC88AQ3V6T2 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC28.23■■■□□ 2.11
CCDC88AQ3V6T2 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC28.23■■■□□ 2.11
CCDC88AQ3V6T2 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC28.23■■■□□ 2.11
CCDC88AQ3V6T2 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC28.22■■■□□ 2.11
CCDC88AQ3V6T2 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
CCDC88AQ3V6T2 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC28.22■■■□□ 2.11
CCDC88AQ3V6T2 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
CCDC88AQ3V6T2 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
CCDC88AQ3V6T2 BX842568.3-201ENST00000418104 571 ntBASIC28.22■■■□□ 2.11
CCDC88AQ3V6T2 VPS53-216ENST00000574029 585 ntTSL 4 BASIC28.22■■■□□ 2.11
CCDC88AQ3V6T2 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC28.21■■■□□ 2.11
CCDC88AQ3V6T2 AC012414.1-201ENST00000556676 535 ntBASIC28.21■■■□□ 2.11
CCDC88AQ3V6T2 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC28.21■■■□□ 2.11
CCDC88AQ3V6T2 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
CCDC88AQ3V6T2 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC28.21■■■□□ 2.11
CCDC88AQ3V6T2 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC28.21■■■□□ 2.11
CCDC88AQ3V6T2 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC28.21■■■□□ 2.11
CCDC88AQ3V6T2 AC245100.8-202ENST00000629247 1058 ntBASIC28.21■■■□□ 2.11
CCDC88AQ3V6T2 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
CCDC88AQ3V6T2 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
CCDC88AQ3V6T2 DLX3-202ENST00000512495 834 ntTSL 2 BASIC28.2■■■□□ 2.1
CCDC88AQ3V6T2 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC28.2■■■□□ 2.1
CCDC88AQ3V6T2 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.1
CCDC88AQ3V6T2 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.1
CCDC88AQ3V6T2 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC28.2■■■□□ 2.1
CCDC88AQ3V6T2 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
CCDC88AQ3V6T2 AC091060.1-201ENST00000623524 1766 ntBASIC28.19■■■□□ 2.1
CCDC88AQ3V6T2 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
CCDC88AQ3V6T2 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
CCDC88AQ3V6T2 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
CCDC88AQ3V6T2 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
CCDC88AQ3V6T2 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC28.19■■■□□ 2.1
CCDC88AQ3V6T2 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC28.19■■■□□ 2.1
CCDC88AQ3V6T2 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
CCDC88AQ3V6T2 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC28.19■■■□□ 2.1
CCDC88AQ3V6T2 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
CCDC88AQ3V6T2 YBX1P1-201ENST00000445822 960 ntBASIC28.19■■■□□ 2.1
CCDC88AQ3V6T2 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC28.19■■■□□ 2.1
CCDC88AQ3V6T2 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC28.19■■■□□ 2.1
CCDC88AQ3V6T2 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC28.19■■■□□ 2.1
CCDC88AQ3V6T2 NKILA-201ENST00000613231 537 ntTSL 4 BASIC28.19■■■□□ 2.1
CCDC88AQ3V6T2 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CCDC88AQ3V6T2 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CCDC88AQ3V6T2 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
CCDC88AQ3V6T2 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC28.18■■■□□ 2.1
CCDC88AQ3V6T2 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
CCDC88AQ3V6T2 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
CCDC88AQ3V6T2 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
CCDC88AQ3V6T2 MPST-208ENST00000628507 698 ntTSL 5 BASIC28.17■■■□□ 2.1
CCDC88AQ3V6T2 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
CCDC88AQ3V6T2 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
CCDC88AQ3V6T2 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC28.17■■■□□ 2.1
CCDC88AQ3V6T2 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC28.17■■■□□ 2.1
CCDC88AQ3V6T2 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC28.17■■■□□ 2.1
CCDC88AQ3V6T2 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
CCDC88AQ3V6T2 GRAMD4P2-201ENST00000423297 1097 ntBASIC28.17■■■□□ 2.1
CCDC88AQ3V6T2 KRT18P14-201ENST00000534205 1250 ntBASIC28.17■■■□□ 2.1
CCDC88AQ3V6T2 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
CCDC88AQ3V6T2 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC28.16■■■□□ 2.1
CCDC88AQ3V6T2 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC28.15■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms