Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PEX3P56589 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PEX3P56589 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC25.17■■□□□ 1.62
PEX3P56589 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC25.17■■□□□ 1.62
PEX3P56589 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC25.17■■□□□ 1.62
PEX3P56589 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PEX3P56589 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
PEX3P56589 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PEX3P56589 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PEX3P56589 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PEX3P56589 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC25.16■■□□□ 1.62
PEX3P56589 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PEX3P56589 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
PEX3P56589 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
PEX3P56589 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC25.16■■□□□ 1.62
PEX3P56589 AK3-203ENST00000447596 705 ntTSL 2 BASIC25.16■■□□□ 1.62
PEX3P56589 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC25.16■■□□□ 1.62
PEX3P56589 ABCB10P4-201ENST00000566803 2184 ntBASIC25.16■■□□□ 1.62
PEX3P56589 EI24-213ENST00000618552 1747 ntTSL 5 BASIC25.16■■□□□ 1.62
PEX3P56589 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC25.16■■□□□ 1.62
PEX3P56589 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC25.16■■□□□ 1.62
PEX3P56589 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PEX3P56589 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PEX3P56589 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC25.15■■□□□ 1.62
PEX3P56589 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC25.15■■□□□ 1.62
PEX3P56589 MIR3621-201ENST00000580529 85 ntBASIC25.15■■□□□ 1.62
PEX3P56589 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
PEX3P56589 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
PEX3P56589 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
PEX3P56589 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC25.14■■□□□ 1.62
PEX3P56589 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
PEX3P56589 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC25.14■■□□□ 1.62
PEX3P56589 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC25.14■■□□□ 1.62
PEX3P56589 AL356740.2-201ENST00000601559 647 ntBASIC25.14■■□□□ 1.62
PEX3P56589 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC25.14■■□□□ 1.62
PEX3P56589 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
PEX3P56589 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.61
PEX3P56589 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.61
PEX3P56589 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
PEX3P56589 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
PEX3P56589 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PEX3P56589 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
PEX3P56589 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PEX3P56589 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PEX3P56589 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC25.13■■□□□ 1.61
PEX3P56589 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
PEX3P56589 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.61
PEX3P56589 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PEX3P56589 SRR-208ENST00000576848 588 ntTSL 4 BASIC25.12■■□□□ 1.61
PEX3P56589 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PEX3P56589 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC25.12■■□□□ 1.61
PEX3P56589 USF2-207ENST00000595068 1612 ntTSL 5 BASIC25.12■■□□□ 1.61
PEX3P56589 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
PEX3P56589 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
PEX3P56589 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
PEX3P56589 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
PEX3P56589 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC25.11■■□□□ 1.61
PEX3P56589 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC25.11■■□□□ 1.61
PEX3P56589 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC25.11■■□□□ 1.61
PEX3P56589 TRIR-202ENST00000588213 841 ntTSL 3 BASIC25.11■■□□□ 1.61
PEX3P56589 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
PEX3P56589 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PEX3P56589 AC093323.1-202ENST00000635031 2045 ntBASIC25.1■■□□□ 1.61
PEX3P56589 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
PEX3P56589 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PEX3P56589 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC25.1■■□□□ 1.61
PEX3P56589 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC25.1■■□□□ 1.61
PEX3P56589 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC25.1■■□□□ 1.61
PEX3P56589 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
PEX3P56589 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC25.1■■□□□ 1.61
PEX3P56589 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PEX3P56589 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
PEX3P56589 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PEX3P56589 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PEX3P56589 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC25.09■■□□□ 1.61
PEX3P56589 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC25.09■■□□□ 1.61
PEX3P56589 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC25.09■■□□□ 1.61
PEX3P56589 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PEX3P56589 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PEX3P56589 RPP21-222ENST00000433076 577 ntTSL 2 BASIC25.08■■□□□ 1.61
PEX3P56589 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
PEX3P56589 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PEX3P56589 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PEX3P56589 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
PEX3P56589 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PEX3P56589 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
PEX3P56589 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PEX3P56589 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PEX3P56589 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PEX3P56589 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PEX3P56589 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC25.07■■□□□ 1.6
PEX3P56589 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC25.07■■□□□ 1.6
PEX3P56589 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PEX3P56589 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC25.07■■□□□ 1.6
PEX3P56589 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
PEX3P56589 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
PEX3P56589 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
PEX3P56589 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
PEX3P56589 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
PEX3P56589 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC25.06■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms