Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS4AQ9UN37 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.37□□□□□ -0.11
VPS4AQ9UN37 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 AC134915.1-201ENST00000426461 574 ntBASIC14.37□□□□□ -0.11
VPS4AQ9UN37 AC006033.1-201ENST00000440505 426 ntBASIC14.37□□□□□ -0.11
VPS4AQ9UN37 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 ARTN-209ENST00000479128 471 ntTSL 3 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 AP001889.1-201ENST00000525414 633 ntBASIC14.37□□□□□ -0.11
VPS4AQ9UN37 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 AL359711.2-201ENST00000563105 872 ntBASIC14.37□□□□□ -0.11
VPS4AQ9UN37 AC009486.1-201ENST00000569860 813 ntBASIC14.37□□□□□ -0.11
VPS4AQ9UN37 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 AC106872.11-201ENST00000605838 421 ntBASIC14.37□□□□□ -0.11
VPS4AQ9UN37 AL118558.3-201ENST00000607414 1079 ntBASIC14.37□□□□□ -0.11
VPS4AQ9UN37 AL022328.3-201ENST00000607943 679 ntBASIC14.37□□□□□ -0.11
VPS4AQ9UN37 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS4AQ9UN37 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.36□□□□□ -0.11
VPS4AQ9UN37 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 PTENP1-202ENST00000532280 3996 ntBASIC14.36□□□□□ -0.11
VPS4AQ9UN37 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 RPL13AP20-201ENST00000459725 609 ntBASIC14.36□□□□□ -0.11
VPS4AQ9UN37 FAM86LP-201ENST00000478302 853 ntBASIC14.36□□□□□ -0.11
VPS4AQ9UN37 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 FOS-206ENST00000555347 1280 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
VPS4AQ9UN37 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms