Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 AC090857.1-201ENST00000527400 390 ntBASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 MIR4706-201ENST00000582134 82 ntBASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 AC008805.1-201ENST00000590892 364 ntBASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 AL133499.1-201ENST00000596207 608 ntBASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 AC008825.2-201ENST00000603374 718 ntBASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 DBET-201ENST00000630918 3363 ntBASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 AC144831.1-201ENST00000573312 2656 ntBASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CCDC3Q9BQI4 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 TCAF2P1-201ENST00000291129 2421 ntBASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 AC244394.1-201ENST00000435000 1665 ntBASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 ACE3P-201ENST00000423435 1973 ntBASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 RN7SKP214-201ENST00000364208 315 ntBASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 HNRNPA1P41-201ENST00000397777 928 ntBASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 AC012441.2-201ENST00000444843 739 ntBASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 AC006335.1-201ENST00000445200 547 ntBASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 EEF1DP6-201ENST00000449232 372 ntBASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 MPRIPP1-201ENST00000452433 1089 ntBASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 RCC2P8-201ENST00000502779 1035 ntBASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 CENPX-208ENST00000584347 799 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 AL132994.2-201ENST00000603120 687 ntBASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 NAP1L6-202ENST00000641404 1222 ntBASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC3Q9BQI4 AL008718.2-201ENST00000609206 1313 ntBASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms