Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 AC092933.1-201ENST00000393644 945 ntBASIC14.22□□□□□ -0.13
VMP1Q96GC9 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 C2orf27AP3-201ENST00000434123 579 ntBASIC14.22□□□□□ -0.13
VMP1Q96GC9 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 AC106760.1-201ENST00000508690 800 ntBASIC14.22□□□□□ -0.13
VMP1Q96GC9 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 AL354718.3-201ENST00000616414 581 ntBASIC14.22□□□□□ -0.13
VMP1Q96GC9 CR382287.1-201ENST00000623954 586 ntBASIC14.22□□□□□ -0.13
VMP1Q96GC9 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
VMP1Q96GC9 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VMP1Q96GC9 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
VMP1Q96GC9 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
VMP1Q96GC9 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VMP1Q96GC9 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VMP1Q96GC9 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
VMP1Q96GC9 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 LRRC59-203ENST00000576448 1531 ntBASIC14.21□□□□□ -0.13
VMP1Q96GC9 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
VMP1Q96GC9 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VMP1Q96GC9 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
VMP1Q96GC9 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
VMP1Q96GC9 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VMP1Q96GC9 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
VMP1Q96GC9 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VMP1Q96GC9 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 AC016694.1-201ENST00000434179 700 ntBASIC14.21□□□□□ -0.13
VMP1Q96GC9 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 MIR6805-201ENST00000615055 62 ntBASIC14.21□□□□□ -0.13
VMP1Q96GC9 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
VMP1Q96GC9 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
VMP1Q96GC9 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 AC023024.2-201ENST00000623561 1993 ntBASIC14.21□□□□□ -0.13
VMP1Q96GC9 KRT8P14-201ENST00000414254 1442 ntBASIC14.21□□□□□ -0.13
VMP1Q96GC9 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
VMP1Q96GC9 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.21□□□□□ -0.14
VMP1Q96GC9 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
VMP1Q96GC9 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
VMP1Q96GC9 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
VMP1Q96GC9 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
VMP1Q96GC9 COL6A4P2-202ENST00000504443 2753 ntBASIC14.21□□□□□ -0.14
VMP1Q96GC9 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
VMP1Q96GC9 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
VMP1Q96GC9 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
VMP1Q96GC9 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
VMP1Q96GC9 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 STK40-201ENST00000359297 4837 ntTSL 2 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
VMP1Q96GC9 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VMP1Q96GC9 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms