Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 GALP-202ENST00000440823 889 ntTSL 5 BASIC23.81■■□□□ 1.4
CUX1P39880 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC23.81■■□□□ 1.4
CUX1P39880 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC23.81■■□□□ 1.4
CUX1P39880 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CUX1P39880 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC23.81■■□□□ 1.4
CUX1P39880 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC23.81■■□□□ 1.4
CUX1P39880 HNRNPA1P5-201ENST00000558213 966 ntBASIC23.81■■□□□ 1.4
CUX1P39880 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC23.81■■□□□ 1.4
CUX1P39880 AL049840.2-201ENST00000602722 535 ntBASIC23.81■■□□□ 1.4
CUX1P39880 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC23.81■■□□□ 1.4
CUX1P39880 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CUX1P39880 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC23.81■■□□□ 1.4
CUX1P39880 AC011498.7-201ENST00000624986 2027 ntBASIC23.81■■□□□ 1.4
CUX1P39880 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC23.81■■□□□ 1.4
CUX1P39880 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CUX1P39880 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CUX1P39880 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
CUX1P39880 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC23.8■■□□□ 1.4
CUX1P39880 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CUX1P39880 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CUX1P39880 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
CUX1P39880 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CUX1P39880 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CUX1P39880 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
CUX1P39880 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CUX1P39880 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC23.8■■□□□ 1.4
CUX1P39880 AL080243.1-201ENST00000423293 1060 ntBASIC23.8■■□□□ 1.4
CUX1P39880 IFNWP2-201ENST00000431203 580 ntBASIC23.8■■□□□ 1.4
CUX1P39880 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC23.8■■□□□ 1.4
CUX1P39880 GOLGA6L16P-201ENST00000441780 1299 ntBASIC23.8■■□□□ 1.4
CUX1P39880 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC23.8■■□□□ 1.4
CUX1P39880 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC23.8■■□□□ 1.4
CUX1P39880 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC23.8■■□□□ 1.4
CUX1P39880 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
CUX1P39880 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
CUX1P39880 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC23.8■■□□□ 1.4
CUX1P39880 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CUX1P39880 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CUX1P39880 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CUX1P39880 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CUX1P39880 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CUX1P39880 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC23.8■■□□□ 1.4
CUX1P39880 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
CUX1P39880 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
CUX1P39880 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CUX1P39880 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CUX1P39880 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CUX1P39880 DUT-208ENST00000559540 1441 ntTSL 2 BASIC23.8■■□□□ 1.4
CUX1P39880 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CUX1P39880 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
CUX1P39880 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
CUX1P39880 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CUX1P39880 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC23.79■■□□□ 1.4
CUX1P39880 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
CUX1P39880 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CUX1P39880 AL590235.1-201ENST00000564650 861 ntBASIC23.79■■□□□ 1.4
CUX1P39880 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC23.79■■□□□ 1.4
CUX1P39880 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
CUX1P39880 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CUX1P39880 GGNBP1-204ENST00000613113 887 ntBASIC23.79■■□□□ 1.4
CUX1P39880 AC073869.4-201ENST00000620841 800 ntBASIC23.79■■□□□ 1.4
CUX1P39880 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
CUX1P39880 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
CUX1P39880 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
CUX1P39880 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
CUX1P39880 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
CUX1P39880 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
CUX1P39880 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
CUX1P39880 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC23.79■■□□□ 1.4
CUX1P39880 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CUX1P39880 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CUX1P39880 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC23.79■■□□□ 1.4
CUX1P39880 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CUX1P39880 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC23.79■■□□□ 1.4
CUX1P39880 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CUX1P39880 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
CUX1P39880 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CUX1P39880 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CUX1P39880 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CUX1P39880 AC104961.1-201ENST00000427605 771 ntBASIC23.79■■□□□ 1.4
CUX1P39880 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CUX1P39880 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC23.79■■□□□ 1.4
CUX1P39880 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CUX1P39880 AL512310.5-201ENST00000551999 515 ntBASIC23.79■■□□□ 1.4
CUX1P39880 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CUX1P39880 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CUX1P39880 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CUX1P39880 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CUX1P39880 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CUX1P39880 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC23.78■■□□□ 1.4
CUX1P39880 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC23.78■■□□□ 1.4
CUX1P39880 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
CUX1P39880 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC23.78■■□□□ 1.4
CUX1P39880 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC23.78■■□□□ 1.4
CUX1P39880 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC23.78■■□□□ 1.4
CUX1P39880 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC23.78■■□□□ 1.4
CUX1P39880 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC23.78■■□□□ 1.4
CUX1P39880 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC23.78■■□□□ 1.4
CUX1P39880 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CUX1P39880 AC018846.1-201ENST00000568231 183 ntBASIC23.78■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms