Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.49■□□□□ 0.07
BDNFP23560 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC15.49■□□□□ 0.07
BDNFP23560 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC15.49■□□□□ 0.07
BDNFP23560 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 AC011742.3-201ENST00000439053 820 ntBASIC15.49■□□□□ 0.07
BDNFP23560 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC15.49■□□□□ 0.07
BDNFP23560 AC006122.1-201ENST00000493323 440 ntBASIC15.49■□□□□ 0.07
BDNFP23560 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC15.49■□□□□ 0.07
BDNFP23560 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC15.49■□□□□ 0.07
BDNFP23560 SYT17-208ENST00000568433 812 ntTSL 3 BASIC15.49■□□□□ 0.07
BDNFP23560 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC15.49■□□□□ 0.07
BDNFP23560 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC15.49■□□□□ 0.07
BDNFP23560 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
BDNFP23560 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.49■□□□□ 0.07
BDNFP23560 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.49■□□□□ 0.07
BDNFP23560 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 AC009093.10-201ENST00000641956 1442 ntBASIC15.49■□□□□ 0.07
BDNFP23560 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.49■□□□□ 0.07
BDNFP23560 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 CYP4F23P-201ENST00000593402 1579 ntBASIC15.49■□□□□ 0.07
BDNFP23560 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
BDNFP23560 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
BDNFP23560 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
BDNFP23560 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.48■□□□□ 0.07
BDNFP23560 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.48■□□□□ 0.07
BDNFP23560 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC15.48■□□□□ 0.07
BDNFP23560 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
BDNFP23560 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.48■□□□□ 0.07
BDNFP23560 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC15.48■□□□□ 0.07
BDNFP23560 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC15.48■□□□□ 0.07
BDNFP23560 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC15.48■□□□□ 0.07
BDNFP23560 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC15.48■□□□□ 0.07
BDNFP23560 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.48■□□□□ 0.07
BDNFP23560 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC15.48■□□□□ 0.07
BDNFP23560 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 SLC16A6P1-201ENST00000413214 1059 ntBASIC15.48■□□□□ 0.07
BDNFP23560 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC15.48■□□□□ 0.07
BDNFP23560 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC15.48■□□□□ 0.07
BDNFP23560 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 TPI1-206ENST00000488464 791 ntTSL 5 BASIC15.48■□□□□ 0.07
BDNFP23560 AC125604.1-201ENST00000496255 707 ntBASIC15.48■□□□□ 0.07
BDNFP23560 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC15.48■□□□□ 0.07
BDNFP23560 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC15.48■□□□□ 0.07
BDNFP23560 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC15.48■□□□□ 0.07
BDNFP23560 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.48■□□□□ 0.07
BDNFP23560 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC15.48■□□□□ 0.07
BDNFP23560 RN7SL774P-201ENST00000577467 290 ntBASIC15.48■□□□□ 0.07
BDNFP23560 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC15.48■□□□□ 0.07
BDNFP23560 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
BDNFP23560 AL132994.2-201ENST00000603120 687 ntBASIC15.48■□□□□ 0.07
BDNFP23560 AC091544.8-201ENST00000619490 361 ntBASIC15.48■□□□□ 0.07
BDNFP23560 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC15.48■□□□□ 0.07
BDNFP23560 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
BDNFP23560 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC15.48■□□□□ 0.07
BDNFP23560 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
BDNFP23560 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.48■□□□□ 0.07
BDNFP23560 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
BDNFP23560 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.48■□□□□ 0.07
BDNFP23560 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC15.48■□□□□ 0.07
BDNFP23560 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
BDNFP23560 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms