Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
LDB3O75112 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 AC007191.1-201ENST00000623179 2995 ntBASIC13.87□□□□□ -0.19
LDB3O75112 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.87□□□□□ -0.19
LDB3O75112 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
LDB3O75112 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC13.87□□□□□ -0.19
LDB3O75112 MPI-203ENST00000535694 1523 ntTSL 2 BASIC13.87□□□□□ -0.19
LDB3O75112 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC13.87□□□□□ -0.19
LDB3O75112 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.87□□□□□ -0.19
LDB3O75112 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC13.87□□□□□ -0.19
LDB3O75112 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 MIR326-201ENST00000362220 95 ntBASIC13.87□□□□□ -0.19
LDB3O75112 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC13.87□□□□□ -0.19
LDB3O75112 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 AC079178.1-201ENST00000420915 656 ntBASIC13.87□□□□□ -0.19
LDB3O75112 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
LDB3O75112 CICP12-201ENST00000455801 843 ntBASIC13.87□□□□□ -0.19
LDB3O75112 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.87□□□□□ -0.19
LDB3O75112 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC13.87□□□□□ -0.19
LDB3O75112 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.87□□□□□ -0.19
LDB3O75112 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC13.87□□□□□ -0.19
LDB3O75112 RIT1-205ENST00000539040 919 ntTSL 2 BASIC13.87□□□□□ -0.19
LDB3O75112 AC103988.2-201ENST00000561804 725 ntBASIC13.87□□□□□ -0.19
LDB3O75112 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC13.87□□□□□ -0.19
LDB3O75112 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC13.87□□□□□ -0.19
LDB3O75112 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC13.87□□□□□ -0.19
LDB3O75112 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC13.87□□□□□ -0.19
LDB3O75112 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
LDB3O75112 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC13.87□□□□□ -0.19
LDB3O75112 E2F3P2-201ENST00000447755 1422 ntBASIC13.87□□□□□ -0.19
LDB3O75112 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.87□□□□□ -0.19
LDB3O75112 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
LDB3O75112 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
LDB3O75112 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
LDB3O75112 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LDB3O75112 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.87□□□□□ -0.19
LDB3O75112 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
LDB3O75112 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
LDB3O75112 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
LDB3O75112 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.86□□□□□ -0.19
LDB3O75112 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 AC010141.1-201ENST00000411585 623 ntBASIC13.86□□□□□ -0.19
LDB3O75112 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC13.86□□□□□ -0.19
LDB3O75112 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
LDB3O75112 TPT1P11-201ENST00000458482 498 ntBASIC13.86□□□□□ -0.19
LDB3O75112 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC13.86□□□□□ -0.19
LDB3O75112 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.86□□□□□ -0.19
LDB3O75112 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC13.86□□□□□ -0.19
LDB3O75112 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC13.86□□□□□ -0.19
LDB3O75112 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC13.86□□□□□ -0.19
LDB3O75112 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC13.86□□□□□ -0.19
LDB3O75112 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
LDB3O75112 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.86□□□□□ -0.19
LDB3O75112 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.86□□□□□ -0.19
LDB3O75112 AC244157.2-201ENST00000616239 1006 ntBASIC13.86□□□□□ -0.19
LDB3O75112 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC13.86□□□□□ -0.19
LDB3O75112 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
LDB3O75112 GOLGA8DP-202ENST00000341390 2184 ntBASIC13.86□□□□□ -0.19
LDB3O75112 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC13.86□□□□□ -0.19
LDB3O75112 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
LDB3O75112 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 BX640514.1-201ENST00000583223 1918 ntBASIC13.86□□□□□ -0.19
LDB3O75112 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LDB3O75112 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms