Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC18.57■□□□□ 0.56
NPHP1O15259 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
NPHP1O15259 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
NPHP1O15259 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
NPHP1O15259 LILRP1-201ENST00000444199 1370 ntBASIC18.57■□□□□ 0.56
NPHP1O15259 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 AP005117.1-202ENST00000581724 1908 ntBASIC18.57■□□□□ 0.56
NPHP1O15259 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 RPSAP31-201ENST00000416648 895 ntBASIC18.57■□□□□ 0.56
NPHP1O15259 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 CICP12-201ENST00000455801 843 ntBASIC18.57■□□□□ 0.56
NPHP1O15259 CFL1-206ENST00000527344 962 ntTSL 2 BASIC18.57■□□□□ 0.56
NPHP1O15259 AP002803.1-201ENST00000528836 498 ntBASIC18.57■□□□□ 0.56
NPHP1O15259 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC18.57■□□□□ 0.56
NPHP1O15259 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC18.57■□□□□ 0.56
NPHP1O15259 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC18.57■□□□□ 0.56
NPHP1O15259 NAT9-220ENST00000582870 896 ntTSL 5 BASIC18.57■□□□□ 0.56
NPHP1O15259 LINC01783-202ENST00000614408 828 ntBASIC18.57■□□□□ 0.56
NPHP1O15259 BX284668.2-205ENST00000619677 828 ntBASIC18.57■□□□□ 0.56
NPHP1O15259 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC18.57■□□□□ 0.56
NPHP1O15259 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC18.57■□□□□ 0.56
NPHP1O15259 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC18.57■□□□□ 0.56
NPHP1O15259 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC18.57■□□□□ 0.56
NPHP1O15259 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NPHP1O15259 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC18.57■□□□□ 0.56
NPHP1O15259 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
NPHP1O15259 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC18.56■□□□□ 0.56
NPHP1O15259 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC18.56■□□□□ 0.56
NPHP1O15259 AL035414.1-201ENST00000451327 857 ntBASIC18.56■□□□□ 0.56
NPHP1O15259 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC18.56■□□□□ 0.56
NPHP1O15259 AL031713.1-201ENST00000564813 661 ntBASIC18.56■□□□□ 0.56
NPHP1O15259 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC18.56■□□□□ 0.56
NPHP1O15259 AC026803.1-201ENST00000569130 274 ntBASIC18.56■□□□□ 0.56
NPHP1O15259 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC18.56■□□□□ 0.56
NPHP1O15259 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC18.56■□□□□ 0.56
NPHP1O15259 AC009084.3-201ENST00000623356 437 ntBASIC18.56■□□□□ 0.56
NPHP1O15259 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
NPHP1O15259 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC18.56■□□□□ 0.56
NPHP1O15259 AC003102.2-201ENST00000589195 1469 ntBASIC18.56■□□□□ 0.56
NPHP1O15259 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC18.56■□□□□ 0.56
NPHP1O15259 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC18.56■□□□□ 0.56
NPHP1O15259 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.56■□□□□ 0.56
NPHP1O15259 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC18.56■□□□□ 0.56
NPHP1O15259 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPHP1O15259 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.56■□□□□ 0.56
NPHP1O15259 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPHP1O15259 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC18.55■□□□□ 0.56
NPHP1O15259 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NPHP1O15259 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC18.55■□□□□ 0.56
NPHP1O15259 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPHP1O15259 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC18.55■□□□□ 0.56
NPHP1O15259 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NPHP1O15259 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
NPHP1O15259 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
NPHP1O15259 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NPHP1O15259 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPHP1O15259 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPHP1O15259 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPHP1O15259 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC18.55■□□□□ 0.56
NPHP1O15259 TLE1P1-201ENST00000422965 589 ntBASIC18.55■□□□□ 0.56
NPHP1O15259 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC18.55■□□□□ 0.56
NPHP1O15259 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC18.55■□□□□ 0.56
NPHP1O15259 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC18.55■□□□□ 0.56
NPHP1O15259 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPHP1O15259 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms