Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SOX2P48431 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SOX2P48431 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
SOX2P48431 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
SOX2P48431 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC13.06□□□□□ -0.32
SOX2P48431 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC13.06□□□□□ -0.32
SOX2P48431 AC107890.1-201ENST00000422478 521 ntBASIC13.06□□□□□ -0.32
SOX2P48431 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC13.06□□□□□ -0.32
SOX2P48431 AC114501.2-201ENST00000439631 535 ntBASIC13.06□□□□□ -0.32
SOX2P48431 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC13.06□□□□□ -0.32
SOX2P48431 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC13.06□□□□□ -0.32
SOX2P48431 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC13.06□□□□□ -0.32
SOX2P48431 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC13.06□□□□□ -0.32
SOX2P48431 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC13.06□□□□□ -0.32
SOX2P48431 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SOX2P48431 AC092865.5-201ENST00000545435 363 ntBASIC13.06□□□□□ -0.32
SOX2P48431 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC13.06□□□□□ -0.32
SOX2P48431 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC13.06□□□□□ -0.32
SOX2P48431 AC004449.1-201ENST00000564240 433 ntBASIC13.06□□□□□ -0.32
SOX2P48431 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC13.06□□□□□ -0.32
SOX2P48431 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC13.06□□□□□ -0.32
SOX2P48431 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SOX2P48431 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SOX2P48431 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
SOX2P48431 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
SOX2P48431 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC13.06□□□□□ -0.32
SOX2P48431 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SOX2P48431 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SOX2P48431 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC13.06□□□□□ -0.32
SOX2P48431 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SOX2P48431 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
SOX2P48431 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SOX2P48431 KRT8P24-201ENST00000560290 1559 ntBASIC13.06□□□□□ -0.32
SOX2P48431 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
SOX2P48431 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC13.06□□□□□ -0.32
SOX2P48431 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
SOX2P48431 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
SOX2P48431 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC13.06□□□□□ -0.32
SOX2P48431 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SOX2P48431 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
SOX2P48431 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC13.06□□□□□ -0.32
SOX2P48431 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
SOX2P48431 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC13.06□□□□□ -0.32
SOX2P48431 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
SOX2P48431 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC13.06□□□□□ -0.32
SOX2P48431 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC13.06□□□□□ -0.32
SOX2P48431 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC13.05□□□□□ -0.32
SOX2P48431 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC13.05□□□□□ -0.32
SOX2P48431 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
SOX2P48431 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 RN7SL832P-201ENST00000607781 1756 ntBASIC13.05□□□□□ -0.32
SOX2P48431 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
SOX2P48431 AL139400.1-201ENST00000366220 510 ntBASIC13.05□□□□□ -0.32
SOX2P48431 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC13.05□□□□□ -0.32
SOX2P48431 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC13.05□□□□□ -0.32
SOX2P48431 AL645937.2-201ENST00000396808 931 ntBASIC13.05□□□□□ -0.32
SOX2P48431 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC13.05□□□□□ -0.32
SOX2P48431 AC092580.3-201ENST00000430932 139 ntBASIC13.05□□□□□ -0.32
SOX2P48431 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC13.05□□□□□ -0.32
SOX2P48431 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC13.05□□□□□ -0.32
SOX2P48431 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 FAM86LP-201ENST00000478302 853 ntBASIC13.05□□□□□ -0.32
SOX2P48431 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC13.05□□□□□ -0.32
SOX2P48431 AC140878.1-201ENST00000565277 250 ntBASIC13.05□□□□□ -0.32
SOX2P48431 AL049840.4-201ENST00000602422 811 ntBASIC13.05□□□□□ -0.32
SOX2P48431 AC134684.3-201ENST00000641758 218 ntBASIC13.05□□□□□ -0.32
SOX2P48431 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
SOX2P48431 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
SOX2P48431 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC13.05□□□□□ -0.32
SOX2P48431 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
SOX2P48431 AC005562.1-201ENST00000583030 3219 ntBASIC13.05□□□□□ -0.32
SOX2P48431 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC13.05□□□□□ -0.32
SOX2P48431 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
SOX2P48431 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
SOX2P48431 AC105206.1-202ENST00000314927 2368 ntBASIC13.05□□□□□ -0.32
SOX2P48431 AC100757.3-201ENST00000622361 1406 ntBASIC13.05□□□□□ -0.32
SOX2P48431 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC13.04□□□□□ -0.32
SOX2P48431 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms