Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
PDLIM1O00151 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.15□□□□□ -0.14
PDLIM1O00151 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.15□□□□□ -0.14
PDLIM1O00151 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
PDLIM1O00151 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.15□□□□□ -0.14
PDLIM1O00151 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.15□□□□□ -0.14
PDLIM1O00151 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.15□□□□□ -0.14
PDLIM1O00151 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.15□□□□□ -0.14
PDLIM1O00151 AC027369.6-201ENST00000525520 931 ntBASIC14.15□□□□□ -0.14
PDLIM1O00151 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.15□□□□□ -0.14
PDLIM1O00151 AC015910.1-201ENST00000579400 975 ntBASIC14.15□□□□□ -0.14
PDLIM1O00151 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.15□□□□□ -0.14
PDLIM1O00151 CMIP-208ENST00000566462 3512 ntTSL 4 BASIC14.15□□□□□ -0.14
PDLIM1O00151 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC14.15□□□□□ -0.14
PDLIM1O00151 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 AC090505.1-201ENST00000430515 1834 ntBASIC14.15□□□□□ -0.14
PDLIM1O00151 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC14.15□□□□□ -0.14
PDLIM1O00151 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.15□□□□□ -0.14
PDLIM1O00151 FAM90A12P-201ENST00000519497 2375 ntBASIC14.15□□□□□ -0.14
PDLIM1O00151 FAM90A24P-201ENST00000520792 2369 ntBASIC14.15□□□□□ -0.14
PDLIM1O00151 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PDLIM1O00151 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
PDLIM1O00151 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.15
PDLIM1O00151 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.14□□□□□ -0.15
PDLIM1O00151 INE2-201ENST00000630399 1874 ntBASIC14.14□□□□□ -0.15
PDLIM1O00151 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
PDLIM1O00151 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
PDLIM1O00151 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
PDLIM1O00151 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.14□□□□□ -0.15
PDLIM1O00151 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
PDLIM1O00151 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
PDLIM1O00151 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
PDLIM1O00151 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
PDLIM1O00151 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.14□□□□□ -0.15
PDLIM1O00151 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
PDLIM1O00151 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 BASP1P1-201ENST00000430708 665 ntBASIC14.14□□□□□ -0.15
PDLIM1O00151 AC241585.1-201ENST00000433527 519 ntBASIC14.14□□□□□ -0.15
PDLIM1O00151 HIST3H2BA-201ENST00000436555 524 ntBASIC14.14□□□□□ -0.15
PDLIM1O00151 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.14□□□□□ -0.15
PDLIM1O00151 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.14□□□□□ -0.15
PDLIM1O00151 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.14□□□□□ -0.15
PDLIM1O00151 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.14□□□□□ -0.15
PDLIM1O00151 SPCS2P1-201ENST00000561636 679 ntBASIC14.14□□□□□ -0.15
PDLIM1O00151 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.14□□□□□ -0.15
PDLIM1O00151 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.14□□□□□ -0.15
PDLIM1O00151 AC025181.2-201ENST00000606994 802 ntBASIC14.14□□□□□ -0.15
PDLIM1O00151 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
PDLIM1O00151 MPZL2-201ENST00000278937 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 SLC26A6-207ENST00000420764 2630 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.14□□□□□ -0.15
PDLIM1O00151 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.14□□□□□ -0.15
PDLIM1O00151 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
PDLIM1O00151 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
PDLIM1O00151 SLC1A2-208ENST00000606205 1890 ntTSL 2 BASIC14.14□□□□□ -0.15
PDLIM1O00151 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC14.14□□□□□ -0.15
PDLIM1O00151 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 KRT8P22-201ENST00000562317 1415 ntBASIC14.14□□□□□ -0.15
PDLIM1O00151 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
PDLIM1O00151 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
PDLIM1O00151 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PDLIM1O00151 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM1O00151 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms