Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 AP006294.1-201ENST00000415407 339 ntBASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 AC244107.1-201ENST00000442033 332 ntBASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 INE1-201ENST00000456273 945 ntBASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 MIR4783-201ENST00000580343 82 ntBASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 AC002472.3-201ENST00000640124 621 ntBASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 STK3-218ENST00000617590 2485 ntTSL 5 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC13.48□□□□□ -0.25
RSPO3Q9BXY4 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 TUBB8P4-201ENST00000511806 1324 ntBASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 LINC02486-201ENST00000604157 3000 ntBASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 RGS5-214ENST00000429865 754 ntTSL 3 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 FAM8A4P-201ENST00000435433 1213 ntBASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 COX20P2-201ENST00000452636 358 ntBASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 C2orf69P2-201ENST00000562032 1123 ntBASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 AC239800.4-201ENST00000603712 296 ntBASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 AC006453.4-201ENST00000636949 1252 ntBASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RSPO3Q9BXY4 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms