Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TMBIM7P-203ENST00000641617 1718 ntBASIC14.26□□□□□ -0.13
COL28A1Q2UY09 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL28A1Q2UY09 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 AP000356.3-201ENST00000382243 753 ntBASIC14.25□□□□□ -0.13
COL28A1Q2UY09 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 RGS5-214ENST00000429865 754 ntTSL 3 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 AC114812.1-204ENST00000449669 728 ntBASIC14.25□□□□□ -0.13
COL28A1Q2UY09 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 GAPDHP40-201ENST00000505218 1006 ntBASIC14.25□□□□□ -0.13
COL28A1Q2UY09 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 AC242376.2-201ENST00000619355 883 ntBASIC14.25□□□□□ -0.13
COL28A1Q2UY09 FO393412.1-201ENST00000619841 382 ntBASIC14.25□□□□□ -0.13
COL28A1Q2UY09 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 LRRC59-203ENST00000576448 1531 ntBASIC14.25□□□□□ -0.13
COL28A1Q2UY09 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
COL28A1Q2UY09 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 AC004899.1-201ENST00000424687 1714 ntBASIC14.24□□□□□ -0.13
COL28A1Q2UY09 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 AL031713.1-201ENST00000564813 661 ntBASIC14.24□□□□□ -0.13
COL28A1Q2UY09 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 ETV2-207ENST00000619399 994 ntTSL 5 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 AC084364.1-201ENST00000551967 1556 ntBASIC14.24□□□□□ -0.13
COL28A1Q2UY09 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms